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F8CLC0 (F8CLC0_MYXFH) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 17. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length318 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rluA family. RuleBase RU004243

Ontologies

Keywords
   Molecular functionIsomerase RuleBase RU003886
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processpseudouridine synthesis

Inferred from electronic annotation. Source: InterPro

   Molecular_functionRNA binding

Inferred from electronic annotation. Source: InterPro

pseudouridine synthase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
F8CLC0 [UniParc].

Last modified September 21, 2011. Version 1.
Checksum: F0BF0158D7AF2403

FASTA31835,369
        10         20         30         40         50         60 
MIEYRIEADT AGMRLDKHLR KRLPNVPVSH LFKMIRTKKV RVNGKRAQPE QLLSEGDVLT 

        70         80         90        100        110        120 
IRGDEQQLVG AERPKVDPPP PPVDPSRLVI LREDDWLMAV DKPSGMAVHT GSGITGGTLV 

       130        140        150        160        170        180 
DYVRAWLGPK AVRNDFAASP AHRLDRETSG VILVAKRRPA MVHFTEVFTH GLSRKRYLTL 

       190        200        210        220        230        240 
VKGKMPRDSG VIDLPLAEHQ QTAESKARRG VNMQAAVTRW KVVKQSGEAA LLSCAIETGR 

       250        260        270        280        290        300 
THQIRRHLAA IGHPVAGDKK YGDFAFNRDV RARWGLKRLF LHAERIEFPH PEGGAKVAVE 

       310 
APLAAELRDV LKRAALVP 

« Hide

References

[1]"Genome Sequence of the Halotolerant Marine Bacterium Myxococcus fulvus HW-1."
Li Z.F., Li X., Liu H., Liu X., Han K., Wu Z.H., Hu W., Li F.F., Li Y.Z.
J. Bacteriol. 193:5015-5016(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-855 / HW-1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002830 Genomic DNA. Translation: AEI65245.1.
RefSeqYP_004666323.1. NC_015711.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEI65245; AEI65245; LILAB_16710.
GeneID10877791.
KEGGmfu:LILAB_16710.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK06179.
OMAVVELEYE.

Enzyme and pathway databases

BioCycMFUL483219:GJEO-3328-MONOMER.

Family and domain databases

Gene3D3.10.290.10. 1 hit.
InterProIPR020103. PsdUridine_synth_cat_dom.
IPR006225. PsdUridine_synth_RluC/D.
IPR006224. PsdUridine_synth_RluC/D_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
IPR002942. S4_RNA-bd.
[Graphical view]
PfamPF00849. PseudoU_synth_2. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
SMARTSM00363. S4. 1 hit.
[Graphical view]
SUPFAMSSF55120. SSF55120. 1 hit.
TIGRFAMsTIGR00005. rluA_subfam. 1 hit.
PROSITEPS01129. PSI_RLU. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF8CLC0_MYXFH
AccessionPrimary (citable) accession number: F8CLC0
Entry history
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: May 14, 2014
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)