F8CLC0 (F8CLC0_MYXFH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Pseudouridine synthase RuleBase RU003886
EC=5.4.99.- RuleBase RU003886

Gene names

Ordered Locus Names:

LILAB_16710 EMBL AEI65245.1

Organism

Myxococcus fulvus (strain ATCC BAA-855 / HW-1) [Complete proteome] [HAMAP]

Taxonomic identifier

483219 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › delta/epsilon subdivisions › Deltaproteobacteria › Myxococcales › Cystobacterineae › Myxococcaceae › Myxococcus › Myxococcus fulvus

Protein attributes

Sequence length	318 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rluA family. RuleBase RU004243

Ontologies

Keywords
Molecular function	Isomerase RuleBase RU003886
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	pseudouridine synthesis Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: InterPro pseudouridine synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F8CLC0 [UniParc]. Last modified September 21, 2011. Version 1. Checksum: F0BF0158D7AF2403	FASTA	318	35,369
	10 20 30 40 50 60 MIEYRIEADT AGMRLDKHLR KRLPNVPVSH LFKMIRTKKV RVNGKRAQPE QLLSEGDVLT 70 80 90 100 110 120 IRGDEQQLVG AERPKVDPPP PPVDPSRLVI LREDDWLMAV DKPSGMAVHT GSGITGGTLV 130 140 150 160 170 180 DYVRAWLGPK AVRNDFAASP AHRLDRETSG VILVAKRRPA MVHFTEVFTH GLSRKRYLTL 190 200 210 220 230 240 VKGKMPRDSG VIDLPLAEHQ QTAESKARRG VNMQAAVTRW KVVKQSGEAA LLSCAIETGR 250 260 270 280 290 300 THQIRRHLAA IGHPVAGDKK YGDFAFNRDV RARWGLKRLF LHAERIEFPH PEGGAKVAVE 310 APLAAELRDV LKRAALVP

References

[1]

"Genome sequence of the halotolerant marine bacterium Myxococcus fulvus HW-1." Li Z.F., Li X., Liu H., Liu X., Han K., Wu Z.H., Hu W., Li F.F., Li Y.Z. J. Bacteriol. 193:5015-5016(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-855 / HW-1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002830 Genomic DNA. Translation: AEI65245.1.
RefSeq	YP_004666323.1. NC_015711.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEI65245; AEI65245; LILAB_16710.
GeneID	10877791.
KEGG	mfu:LILAB_16710.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K06179.
OMA	HAYFLSI.
Enzyme and pathway databases
BioCyc	MFUL483219:GJEO-3328-MONOMER.
Family and domain databases
Gene3D	3.10.290.10. 1 hit.
InterPro	IPR020103. PsdUridine_synth_cat_dom. IPR006225. PsdUridine_synth_RluC/D. IPR006224. PsdUridine_synth_RluC/D_CS. IPR006145. PsdUridine_synth_RsuA/RluD. IPR002942. S4_RNA-bd. [Graphical view]
Pfam	PF00849. PseudoU_synth_2. 1 hit. PF01479. S4. 1 hit. [Graphical view]
SMART	SM00363. S4. 1 hit. [Graphical view]
SUPFAM	SSF55120. PsdUridine_synth_cat_dom. 1 hit.
TIGRFAMs	TIGR00005. rluA_subfam. 1 hit.
PROSITE	PS01129. PSI_RLU. 1 hit. PS50889. S4. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F8CLC0_MYXFH

Accession

Primary (citable) accession number: F8CLC0

Entry history

Integrated into UniProtKB/TrEMBL:	September 21, 2011
Last sequence update:	September 21, 2011
Last modified:	April 3, 2013
This is version 12 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)