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Protein

Pseudouridine synthase

Gene

LILAB_16710

Organism
Myxococcus fulvus (strain ATCC BAA-855 / HW-1)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Responsible for synthesis of pseudouridine from uracil.UniRule annotation

Catalytic activityi

RNA uridine = RNA pseudouridine.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotation

Enzyme and pathway databases

BioCyciMFUL483219:GJEO-3328-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Pseudouridine synthaseUniRule annotation (EC:5.4.99.-UniRule annotation)
Gene namesi
Ordered Locus Names:LILAB_16710Imported
OrganismiMyxococcus fulvus (strain ATCC BAA-855 / HW-1)Imported
Taxonomic identifieri483219 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaMyxococcalesCystobacterineaeMyxococcaceaeMyxococcus
ProteomesiUP000000488 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi483219.LILAB_16710.

Family & Domainsi

Sequence similaritiesi

Belongs to the pseudouridine synthase RluA family.UniRule annotation

Phylogenomic databases

KOiK06179.
OMAiFTEVFTH.

Family and domain databases

Gene3Di3.10.290.10. 1 hit.
InterProiIPR020103. PsdUridine_synth_cat_dom.
IPR006225. PsdUridine_synth_RluC/D.
IPR006224. PsdUridine_synth_RluC/D_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
IPR002942. S4_RNA-bd.
[Graphical view]
PfamiPF00849. PseudoU_synth_2. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
SMARTiSM00363. S4. 1 hit.
[Graphical view]
SUPFAMiSSF55120. SSF55120. 1 hit.
TIGRFAMsiTIGR00005. rluA_subfam. 1 hit.
PROSITEiPS01129. PSI_RLU. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F8CLC0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIEYRIEADT AGMRLDKHLR KRLPNVPVSH LFKMIRTKKV RVNGKRAQPE
60 70 80 90 100
QLLSEGDVLT IRGDEQQLVG AERPKVDPPP PPVDPSRLVI LREDDWLMAV
110 120 130 140 150
DKPSGMAVHT GSGITGGTLV DYVRAWLGPK AVRNDFAASP AHRLDRETSG
160 170 180 190 200
VILVAKRRPA MVHFTEVFTH GLSRKRYLTL VKGKMPRDSG VIDLPLAEHQ
210 220 230 240 250
QTAESKARRG VNMQAAVTRW KVVKQSGEAA LLSCAIETGR THQIRRHLAA
260 270 280 290 300
IGHPVAGDKK YGDFAFNRDV RARWGLKRLF LHAERIEFPH PEGGAKVAVE
310
APLAAELRDV LKRAALVP
Length:318
Mass (Da):35,369
Last modified:September 21, 2011 - v1
Checksum:iF0BF0158D7AF2403
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002830 Genomic DNA. Translation: AEI65245.1.
RefSeqiWP_013938393.1. NC_015711.1.
YP_004666323.1. NC_015711.1.

Genome annotation databases

EnsemblBacteriaiAEI65245; AEI65245; LILAB_16710.
KEGGimfu:LILAB_16710.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002830 Genomic DNA. Translation: AEI65245.1.
RefSeqiWP_013938393.1. NC_015711.1.
YP_004666323.1. NC_015711.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi483219.LILAB_16710.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEI65245; AEI65245; LILAB_16710.
KEGGimfu:LILAB_16710.

Phylogenomic databases

KOiK06179.
OMAiFTEVFTH.

Enzyme and pathway databases

BioCyciMFUL483219:GJEO-3328-MONOMER.

Family and domain databases

Gene3Di3.10.290.10. 1 hit.
InterProiIPR020103. PsdUridine_synth_cat_dom.
IPR006225. PsdUridine_synth_RluC/D.
IPR006224. PsdUridine_synth_RluC/D_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
IPR002942. S4_RNA-bd.
[Graphical view]
PfamiPF00849. PseudoU_synth_2. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
SMARTiSM00363. S4. 1 hit.
[Graphical view]
SUPFAMiSSF55120. SSF55120. 1 hit.
TIGRFAMsiTIGR00005. rluA_subfam. 1 hit.
PROSITEiPS01129. PSI_RLU. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the halotolerant marine bacterium Myxococcus fulvus HW-1."
    Li Z.F., Li X., Liu H., Liu X., Han K., Wu Z.H., Hu W., Li F.F., Li Y.Z.
    J. Bacteriol. 193:5015-5016(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-855 / HW-1Imported.

Entry informationi

Entry nameiF8CLC0_MYXFH
AccessioniPrimary (citable) accession number: F8CLC0
Entry historyi
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: June 24, 2015
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.