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Protein
Submitted name:

Alpha-amylase

Gene

TOPB45_0280

Organism
Thermodesulfobacterium geofontis (strain OPF15)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseImported, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Enzyme and pathway databases

BioCyciTSP795359:GI1V-294-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha-amylaseImported (EC:3.2.1.1Imported)
Gene namesi
Ordered Locus Names:TOPB45_0280Imported
OrganismiThermodesulfobacterium geofontis (strain OPF15)Imported
Taxonomic identifieri795359 [NCBI]
Taxonomic lineageiBacteriaThermodesulfobacteriaThermodesulfobacterialesThermodesulfobacteriaceaeThermodesulfobacterium
ProteomesiUP000006583 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi795359.TOPB45_0280.

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 57 family.UniRule annotation

Phylogenomic databases

KOiK07405.
OMAiSDHFYYM.

Family and domain databases

Gene3Di3.20.110.10. 2 hits.
InterProiIPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR027291. Glyco_hydro_38/57_N.
IPR004300. Glyco_hydro_57_N.
[Graphical view]
PfamiPF03065. Glyco_hydro_57. 1 hit.
[Graphical view]
SUPFAMiSSF88713. SSF88713. 1 hit.

Sequencei

Sequence statusi: Complete.

F8C384-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLYVIFYFQV HQPFRINKYK VFDIKEKVDY FDEDLNKYIF NKVSERCYLP
60 70 80 90 100
ANKLFKNLIE SSDGRFKISF SITGTFVEQA KRYRPDVFES FLDLVKTGGV
110 120 130 140 150
ELLNETYYHS LSSVFDLNEF LEQVAEHEEL IKKEFGFIPT VFRNTELIYF
160 170 180 190 200
DKLSDILLSL PHIKTILIEG ADKILKGDSP LYPRISYNHA HLLLLKHYRL
210 220 230 240 250
SDDIAFRFSD KSWEEYPLTA EKYVSWIKDL TLIEKGGKNL YLNLFMDYET
260 270 280 290 300
FGEHQWKESG IFEFIKSVVE LLLKERGIAF LLPSEVSHTL NYKPKTISVP
310 320 330 340 350
EPTSWADIER DLSAWLSNSL QWNAMKTCYE LLKIAKEKRK KDLISILKKL
360 370 380 390
TTSDHFYYMC IKYFQDGDVH KYFSPYSSPE EVYRYYMSIL SDIENRLEE
Length:399
Mass (Da):47,367
Last modified:September 21, 2011 - v1
Checksum:iD403063087E052A5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002829 Genomic DNA. Translation: AEH22394.1.
RefSeqiWP_013909094.1. NC_015682.1.
YP_004627322.1. NC_015682.1.

Genome annotation databases

EnsemblBacteriaiAEH22394; AEH22394; TOPB45_0280.
KEGGitop:TOPB45_0280.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002829 Genomic DNA. Translation: AEH22394.1.
RefSeqiWP_013909094.1. NC_015682.1.
YP_004627322.1. NC_015682.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi795359.TOPB45_0280.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEH22394; AEH22394; TOPB45_0280.
KEGGitop:TOPB45_0280.

Phylogenomic databases

KOiK07405.
OMAiSDHFYYM.

Enzyme and pathway databases

BioCyciTSP795359:GI1V-294-MONOMER.

Family and domain databases

Gene3Di3.20.110.10. 2 hits.
InterProiIPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR027291. Glyco_hydro_38/57_N.
IPR004300. Glyco_hydro_57_N.
[Graphical view]
PfamiPF03065. Glyco_hydro_57. 1 hit.
[Graphical view]
SUPFAMiSSF88713. SSF88713. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Thermodesulfobacterium sp. OPB45."
    Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Davenport K., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Hamilton-Brehm S., Elkins J., Woyke T.
    Submitted (JUN-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: OPB45Imported.

Entry informationi

Entry nameiF8C384_THEGP
AccessioniPrimary (citable) accession number: F8C384
Entry historyi
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: June 24, 2015
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.