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F8BMG2

- F8BMG2_OLICM

UniProt

F8BMG2 - F8BMG2_OLICM

Protein
Submitted name:

ATP-dependent DNA ligase Lig

Gene

lig

Organism
Oligotropha carboxidovorans (strain OM4)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 18 (01 Oct 2014)
      Sequence version 1 (21 Sep 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciOCAR1031710:GLI1-2795-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligase LigImported (EC:6.5.1.1Imported)
    Gene namesi
    Name:ligImported
    Ordered Locus Names:OCA4_c27950Imported
    OrganismiOligotropha carboxidovorans (strain OM4)Imported
    Taxonomic identifieri1031710 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeOligotropha
    ProteomesiUP000000487: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliF8BMG2.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.
    OMAiNRHKSGV.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F8BMG2-1 [UniParc]FASTAAdd to Basket

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    MNRFAHLLDR LAYEPGRNNK LRLITAYFRE VPDPDRGWAL AALTGALSFR    50
    HAKPGLIRDL ITARTDPALF ALSYDYVGDL SETVALMWPS VHASTNGDAK 100
    HSPTLTEIVT TLHTLGKTEI PAQLASWLDE LDETGRWALL KLVTGGLRIG 150
    VSARLAKTAA AALGDKDPHE IELIWPGLAP PYLDLFAWLE GRAEKPINRD 200
    PAPFRPVMLA HAIEDSDFAG LDPADFIAEW KWDGIRVQAV SGRKSEEHVL 250
    ARLYSRSGED ITASFPDLVP SLRLPGAIDG ELLVLREGRV QSFNVLQQRL 300
    NRKSVTPKLM KDYPIHLRAY DLLAEGEDDL RDLPFIDRRA RLERFIARLD 350
    DPRIDLSPQV VFATWDDLTA ARANPSDAGA GDDADAVEGV MLKRRDALYL 400
    PGRQRGQWWK WKHDPHVIDA VLMYAQRGHG KRSSYYSDYT FGVWTVGEGG 450
    DELVPVGKAY FGFTDEELVQ IDRFVRRNTV EKFGPVRHVV HEPNKGLVLE 500
    VAFEGLARSP RHKSGVAMRF PRISRLRWDK PPGEADRLET LKRLLKEDLA 550
    SVVAEGLLGR RAG 563
    Length:563
    Mass (Da):63,106
    Last modified:September 21, 2011 - v1
    Checksum:i11802521D813060D
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002821 Genomic DNA. Translation: AEI03912.1.
    RefSeqiWP_012562335.1. NC_017538.1.
    YP_005951793.1. NC_017538.1.

    Genome annotation databases

    EnsemblBacteriaiAEI03912; AEI03912; OCA4_c27950.
    GeneIDi12542625.
    KEGGioco:OCA4_c27950.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002821 Genomic DNA. Translation: AEI03912.1 .
    RefSeqi WP_012562335.1. NC_017538.1.
    YP_005951793.1. NC_017538.1.

    3D structure databases

    ProteinModelPortali F8BMG2.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEI03912 ; AEI03912 ; OCA4_c27950 .
    GeneIDi 12542625.
    KEGGi oco:OCA4_c27950.

    Phylogenomic databases

    KOi K01971.
    OMAi NRHKSGV.

    Enzyme and pathway databases

    BioCyci OCAR1031710:GLI1-2795-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequences of the chemolithoautotrophic Oligotropha carboxidovorans strains OM4 and OM5."
      Volland S., Rachinger M., Strittmatter A., Daniel R., Gottschalk G., Meyer O.
      J. Bacteriol. 193:5043-5043(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: OM4Imported.

    Entry informationi

    Entry nameiF8BMG2_OLICM
    AccessioniPrimary (citable) accession number: F8BMG2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 21, 2011
    Last sequence update: September 21, 2011
    Last modified: October 1, 2014
    This is version 18 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3