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Protein
Submitted name:

Y414 protein

Gene

Metok_0562

Organism
Methanothermococcus okinawensis (strain DSM 14208 / JCM 11175 / IH1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciMOKI647113:GHB9-572-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Y414 proteinImported
Gene namesi
Ordered Locus Names:Metok_0562Imported
OrganismiMethanothermococcus okinawensis (strain DSM 14208 / JCM 11175 / IH1)Imported
Taxonomic identifieri647113 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanococciMethanococcalesMethanococcaceaeMethanothermococcus
ProteomesiUP000009296 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF8ALF3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK07468.
OMAiEEKMNGY.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR001072. Uncharacterised_MJ0414.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
PRINTSiPR01048. Y414FAMILY.
TIGRFAMsiTIGR01209. TIGR01209. 1 hit.

Sequencei

Sequence statusi: Complete.

F8ALF3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDIDILKVSE RLKLDEVDIK KAFERKIISF DMYHNKKYLL FKKKLRHIER
60 70 80 90 100
GTVLFLNNNM DIVMGYPKIR RAMMLYPTLK NYFINKIVVE EKLDGYNVRI
110 120 130 140 150
TKIDNKVMAI TRGGRICPFT TKKALKFLNV NILDDYPNLM LCGEMIGLNN
160 170 180 190 200
PYVPHYYPEV NNILIKSDKN NNKKTKIIEN LGFYIFDVRY RETNKPLSIS
210 220 230 240 250
EKEELLQKYE LPYVKPIGIF NKEDIEHIKK IILTLNDKKR EGVVLKDPDM
260 270 280 290 300
IINPIKYTTH YTQCNDLSVA FRYMYDLGID FMFSRLVREG YQSFEFNEDE
310 320 330 340 350
KEMEKRAKNI GKSILYPMVN SIKNISKGEL ITEDFEIYLD SEEDLNEFLD
360 370 380 390
YLKKLHIAFV VKENQKFENG MHKVKIGRIY NSTNDKIKSH LDGNLW
Length:396
Mass (Da):46,950
Last modified:September 21, 2011 - v1
Checksum:iF2AB4D944D52FEA6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002792 Genomic DNA. Translation: AEH06542.1.
RefSeqiWP_013866728.1. NC_015636.1.
YP_004576320.1. NC_015636.1.

Genome annotation databases

EnsemblBacteriaiAEH06542; AEH06542; Metok_0562.
GeneIDi10772688.
KEGGimok:Metok_0562.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002792 Genomic DNA. Translation: AEH06542.1.
RefSeqiWP_013866728.1. NC_015636.1.
YP_004576320.1. NC_015636.1.

3D structure databases

ProteinModelPortaliF8ALF3.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEH06542; AEH06542; Metok_0562.
GeneIDi10772688.
KEGGimok:Metok_0562.

Phylogenomic databases

KOiK07468.
OMAiEEKMNGY.

Enzyme and pathway databases

BioCyciMOKI647113:GHB9-572-MONOMER.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR001072. Uncharacterised_MJ0414.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
PRINTSiPR01048. Y414FAMILY.
TIGRFAMsiTIGR01209. TIGR01209. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome of Methanothermococcus okinawensis IH1."
    Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Held B., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Sieprawska-Lupa M., Takai K.
    , Miyazaki J., Whitman W., Woyke T.
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 14208 / JCM 11175 / IH1Imported.

Entry informationi

Entry nameiF8ALF3_METOI
AccessioniPrimary (citable) accession number: F8ALF3
Entry historyi
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: April 1, 2015
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.