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Protein
Submitted name:

DNA polymerase LigD, ligase domain protein

Gene

Thein_1426

Organism
Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciTIND667014:GI6G-1462-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, ligase domain proteinImported
Gene namesi
Ordered Locus Names:Thein_1426Imported
OrganismiThermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812)Imported
Taxonomic identifieri667014 [NCBI]
Taxonomic lineageiBacteriaThermodesulfobacteriaThermodesulfobacterialesThermodesulfobacteriaceaeThermodesulfatator
ProteomesiUP000006793 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF8AA06.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiVEVKYGQ.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F8AA06-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLPAYIKPML AKLSSPFDSP RFLYEIKWDG TRCLIFIENG KVRLQNRRLN
60 70 80 90 100
DITYRYPEFW DLPKLVPGDG IIFDGEIVVL KDGRPEFRLL QEREHVKSPL
110 120 130 140 150
KIKMLSERLP ATYMAFDLLY FEGKPILDKP LRERKALLKE LLPESPFVAE
160 170 180 190 200
SQYILEKGVA FFEQVVAQGF EGVMAKDLES PYLPGKRVDF WLKFKPRGKR
210 220 230 240 250
TCVIVGYLLR PDGTLKSLLI AEPTEKGLVY RGKVASGLNT HLSAELLIRL
260 270 280 290 300
KGLEDKKPEN LKGRGFPKGA RWVKPEIYCE VSFQEITNHG QFRAPVLEKV

FL
Length:302
Mass (Da):34,800
Last modified:September 20, 2011 - v1
Checksum:iF060C455AA14B710
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002683 Genomic DNA. Translation: AEH45292.1.
RefSeqiYP_004626256.1. NC_015681.1.

Genome annotation databases

EnsemblBacteriaiAEH45292; AEH45292; Thein_1426.
KEGGitid:Thein_1426.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002683 Genomic DNA. Translation: AEH45292.1.
RefSeqiYP_004626256.1. NC_015681.1.

3D structure databases

ProteinModelPortaliF8AA06.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEH45292; AEH45292; Thein_1426.
KEGGitid:Thein_1426.

Phylogenomic databases

KOiK01971.
OMAiVEVKYGQ.

Enzyme and pathway databases

BioCyciTIND667014:GI6G-1462-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 15286 / JCM 11887 / CIR29812Imported.

Entry informationi

Entry nameiF8AA06_THEID
AccessioniPrimary (citable) accession number: F8AA06
Entry historyi
Integrated into UniProtKB/TrEMBL: September 20, 2011
Last sequence update: September 20, 2011
Last modified: March 31, 2015
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.