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Protein
Submitted name:

DNA polymerase LigD, ligase domain protein

Gene

Celgi_1690

Organism
Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, ligase domain proteinImported
Gene namesi
Ordered Locus Names:Celgi_1690Imported
OrganismiCellvibrio gilvus (strain ATCC 13127 / NRRL B-14078)Imported
Taxonomic identifieri593907 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicrococcineaeCellulomonadaceaeCellulomonas
ProteomesiUP000000485 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiMHVRDPR.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F8A5P6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQPMLATPAP SGVLPRGAAW AFEVKWDGVR VLAEVEGGLV RLLSRTGRPV
60 70 80 90 100
TPAYPELAGL AHLPDVLLDG EVVALEGGVP SFAAIADRMH VRDPRRAAEL
110 120 130 140 150
ARVRPVTFMV FDVLRVAGAD VVERPYDERR RLLEALDLPE HVLLSPVHDD
160 170 180 190 200
GDGLWDVTRA HGLEGVVAKR RASPYRPGAR SGDWVKAAHR RTRTAYVAGW
210 220 230 240 250
RPEQGGSGRL GALLLGAPDR DGALRFLGRA GSGVSGPLAT RLRTSALGLA
260 270 280 290 300
RDTSPFADTV PAVDARGSHW CVPELVVDVR YLGRGREGRL RQPVVRGLRD
310
DATVDPWEQE
Length:310
Mass (Da):33,580
Last modified:September 21, 2011 - v1
Checksum:i2BBAC4DAC9020656
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002665 Genomic DNA. Translation: AEI12201.1.
RefSeqiWP_013883720.1. NC_015671.1.
YP_004600769.1. NC_015671.1.

Genome annotation databases

EnsemblBacteriaiAEI12201; AEI12201; Celgi_1690.
KEGGicga:Celgi_1690.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002665 Genomic DNA. Translation: AEI12201.1.
RefSeqiWP_013883720.1. NC_015671.1.
YP_004600769.1. NC_015671.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEI12201; AEI12201; Celgi_1690.
KEGGicga:Celgi_1690.

Phylogenomic databases

KOiK01971.
OMAiMHVRDPR.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Cellvibrio gilvus ATCC 13127."
    Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Munk A., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Pagani I., Mead D., Brumm P., Woyke T.
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 13127 / NRRL B-14078Imported.

Entry informationi

Entry nameiF8A5P6_CELGA
AccessioniPrimary (citable) accession number: F8A5P6
Entry historyi
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: April 29, 2015
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.