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F7ZH18

- F7ZH18_ROSLO

UniProt

F7ZH18 - F7ZH18_ROSLO

Protein
Submitted name:

Putative ATP-dependent DNA ligase

Gene

RLO149_c029030

Organism
Roseobacter litoralis (strain ATCC 49566 / DSM 6996 / JCM 21268 / NBRC 15278 / OCh 149)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 16 (01 Oct 2014)
      Sequence version 1 (21 Sep 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciRLIT391595:GJEH-2887-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative ATP-dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:RLO149_c029030Imported
    OrganismiRoseobacter litoralis (strain ATCC 49566 / DSM 6996 / JCM 21268 / NBRC 15278 / OCh 149)Imported
    Taxonomic identifieri391595 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRoseobacter
    ProteomesiUP000001353: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliF7ZH18.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F7ZH18-1 [UniParc]FASTAAdd to Basket

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    MKEFAALFNA IDQSTKTTVK TAALAAYFAK APKEDRLWTI AIFSGRRPKR    50
    AVTTTKLREW AAEMADIPLW LFEENYPIVG DLAETIALVL PDTTSTNDTS 100
    LSDWIAALRA LSEADDAQRK AFVRDAWAEL GGTERFVFNK LITGGFRLGI 150
    SQKLMTRALS KATGKPETEL AHRLMGNWHP DDTTWDVLIE ADDPMADASR 200
    PYPFYLSYGL EGAVEDLGAP SEWVAEWKWD GIRGQLILRD GQYFVWSRGE 250
    ELMTDRFPEL AQAVDFFPAG TVLDGELLVW EAGADAPSSF NALQKRIGRK 300
    TVPKKLLAEA PVVLHAYDVL EWQGVDIRQR PFAERRAILQ AACTALPATA 350
    PIKLSPQLSF QDWDSLAQHR GAARDAQAEG VMLKRADSPY LVGRKKGDWW 400
    KWKLDPLTID AVMIYAQAGH GRRANLFTDF TFAVRHGNDL VPFTKAYSGL 450
    TDAEFRAITA WVRKNTLQRF GPVRQVTPHH VFEIAFEGIQ ASPRHKSGVA 500
    LRFPRMARWR QDKPLQEANT LDDLKQMLEL YG 532
    Length:532
    Mass (Da):59,821
    Last modified:September 21, 2011 - v1
    Checksum:i957514065983B2D6
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002623 Genomic DNA. Translation: AEI94860.1.
    RefSeqiYP_004691823.1. NC_015730.1.

    Genome annotation databases

    EnsemblBacteriaiAEI94860; AEI94860; RLO149_c029030.
    GeneIDi10951282.
    KEGGirli:RLO149_c029030.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002623 Genomic DNA. Translation: AEI94860.1 .
    RefSeqi YP_004691823.1. NC_015730.1.

    3D structure databases

    ProteinModelPortali F7ZH18.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEI94860 ; AEI94860 ; RLO149_c029030 .
    GeneIDi 10951282.
    KEGGi rli:RLO149_c029030.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci RLIT391595:GJEH-2887-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Comparative genome analysis and genome-guided physiological analysis of Roseobacter litoralis."
      Kalhoefer D., Thole S., Voget S., Lehmann R., Liesegang H., Wollher A., Daniel R., Simon M., Brinkhoff T.
      BMC Genomics 12:324-324(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 49566 / DSM 6996 / JCM 21268 / NBRC 15278 / OCh 149Imported.

    Entry informationi

    Entry nameiF7ZH18_ROSLO
    AccessioniPrimary (citable) accession number: F7ZH18
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 21, 2011
    Last sequence update: September 21, 2011
    Last modified: October 1, 2014
    This is version 16 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3