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F7ZH18

- F7ZH18_ROSLO

UniProt

F7ZH18 - F7ZH18_ROSLO

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Protein
Submitted name:

Putative ATP-dependent DNA ligase

Gene
RLO149_c029030
Organism
Roseobacter litoralis (strain ATCC 49566 / DSM 6996 / JCM 21268 / NBRC 15278 / OCh 149)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRLIT391595:GJEH-2887-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:RLO149_c029030Imported
OrganismiRoseobacter litoralis (strain ATCC 49566 / DSM 6996 / JCM 21268 / NBRC 15278 / OCh 149)Imported
Taxonomic identifieri391595 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRoseobacter
ProteomesiUP000001353: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF7ZH18.

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F7ZH18-1 [UniParc]FASTAAdd to Basket

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MKEFAALFNA IDQSTKTTVK TAALAAYFAK APKEDRLWTI AIFSGRRPKR    50
AVTTTKLREW AAEMADIPLW LFEENYPIVG DLAETIALVL PDTTSTNDTS 100
LSDWIAALRA LSEADDAQRK AFVRDAWAEL GGTERFVFNK LITGGFRLGI 150
SQKLMTRALS KATGKPETEL AHRLMGNWHP DDTTWDVLIE ADDPMADASR 200
PYPFYLSYGL EGAVEDLGAP SEWVAEWKWD GIRGQLILRD GQYFVWSRGE 250
ELMTDRFPEL AQAVDFFPAG TVLDGELLVW EAGADAPSSF NALQKRIGRK 300
TVPKKLLAEA PVVLHAYDVL EWQGVDIRQR PFAERRAILQ AACTALPATA 350
PIKLSPQLSF QDWDSLAQHR GAARDAQAEG VMLKRADSPY LVGRKKGDWW 400
KWKLDPLTID AVMIYAQAGH GRRANLFTDF TFAVRHGNDL VPFTKAYSGL 450
TDAEFRAITA WVRKNTLQRF GPVRQVTPHH VFEIAFEGIQ ASPRHKSGVA 500
LRFPRMARWR QDKPLQEANT LDDLKQMLEL YG 532
Length:532
Mass (Da):59,821
Last modified:September 21, 2011 - v1
Checksum:i957514065983B2D6
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002623 Genomic DNA. Translation: AEI94860.1.
RefSeqiYP_004691823.1. NC_015730.1.

Genome annotation databases

EnsemblBacteriaiAEI94860; AEI94860; RLO149_c029030.
GeneIDi10951282.
KEGGirli:RLO149_c029030.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002623 Genomic DNA. Translation: AEI94860.1 .
RefSeqi YP_004691823.1. NC_015730.1.

3D structure databases

ProteinModelPortali F7ZH18.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEI94860 ; AEI94860 ; RLO149_c029030 .
GeneIDi 10951282.
KEGGi rli:RLO149_c029030.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci RLIT391595:GJEH-2887-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Comparative genome analysis and genome-guided physiological analysis of Roseobacter litoralis."
    Kalhoefer D., Thole S., Voget S., Lehmann R., Liesegang H., Wollher A., Daniel R., Simon M., Brinkhoff T.
    BMC Genomics 12:324-324(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 49566 / DSM 6996 / JCM 21268 / NBRC 15278 / OCh 149.

Entry informationi

Entry nameiF7ZH18_ROSLO
AccessioniPrimary (citable) accession number: F7ZH18
Entry historyi
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: October 16, 2013
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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