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F7ZH18 (F7ZH18_ROSLO) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 15. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:RLO149_c029030 EMBL AEI94860.1
OrganismRoseobacter litoralis (strain ATCC 49566 / DSM 6996 / JCM 21268 / NBRC 15278 / OCh 149) [Complete proteome] [HAMAP] EMBL AEI94860.1
Taxonomic identifier391595 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRoseobacter

Protein attributes

Sequence length532 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
F7ZH18 [UniParc].

Last modified September 21, 2011. Version 1.
Checksum: 957514065983B2D6

FASTA53259,821
        10         20         30         40         50         60 
MKEFAALFNA IDQSTKTTVK TAALAAYFAK APKEDRLWTI AIFSGRRPKR AVTTTKLREW 

        70         80         90        100        110        120 
AAEMADIPLW LFEENYPIVG DLAETIALVL PDTTSTNDTS LSDWIAALRA LSEADDAQRK 

       130        140        150        160        170        180 
AFVRDAWAEL GGTERFVFNK LITGGFRLGI SQKLMTRALS KATGKPETEL AHRLMGNWHP 

       190        200        210        220        230        240 
DDTTWDVLIE ADDPMADASR PYPFYLSYGL EGAVEDLGAP SEWVAEWKWD GIRGQLILRD 

       250        260        270        280        290        300 
GQYFVWSRGE ELMTDRFPEL AQAVDFFPAG TVLDGELLVW EAGADAPSSF NALQKRIGRK 

       310        320        330        340        350        360 
TVPKKLLAEA PVVLHAYDVL EWQGVDIRQR PFAERRAILQ AACTALPATA PIKLSPQLSF 

       370        380        390        400        410        420 
QDWDSLAQHR GAARDAQAEG VMLKRADSPY LVGRKKGDWW KWKLDPLTID AVMIYAQAGH 

       430        440        450        460        470        480 
GRRANLFTDF TFAVRHGNDL VPFTKAYSGL TDAEFRAITA WVRKNTLQRF GPVRQVTPHH 

       490        500        510        520        530 
VFEIAFEGIQ ASPRHKSGVA LRFPRMARWR QDKPLQEANT LDDLKQMLEL YG 

« Hide

References

[1]"Comparative genome analysis and genome-guided physiological analysis of Roseobacter litoralis."
Kalhoefer D., Thole S., Voget S., Lehmann R., Liesegang H., Wollher A., Daniel R., Simon M., Brinkhoff T.
BMC Genomics 12:324-324(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 49566 / DSM 6996 / JCM 21268 / NBRC 15278 / OCh 149.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002623 Genomic DNA. Translation: AEI94860.1.
RefSeqYP_004691823.1. NC_015730.1.

3D structure databases

ProteinModelPortalF7ZH18.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEI94860; AEI94860; RLO149_c029030.
GeneID10951282.
KEGGrli:RLO149_c029030.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycRLIT391595:GJEH-2887-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF7ZH18_ROSLO
AccessionPrimary (citable) accession number: F7ZH18
Entry history
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: October 16, 2013
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)