Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Putative ATP-dependent DNA ligase

Gene

RLO149_c029030

Organism
Roseobacter litoralis (strain ATCC 49566 / DSM 6996 / JCM 21268 / NBRC 15278 / OCh 149)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRLIT391595:GJEH-2887-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:RLO149_c029030Imported
OrganismiRoseobacter litoralis (strain ATCC 49566 / DSM 6996 / JCM 21268 / NBRC 15278 / OCh 149)Imported
Taxonomic identifieri391595 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRoseobacter
ProteomesiUP000001353 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF7ZH18.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK10747.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F7ZH18-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKEFAALFNA IDQSTKTTVK TAALAAYFAK APKEDRLWTI AIFSGRRPKR
60 70 80 90 100
AVTTTKLREW AAEMADIPLW LFEENYPIVG DLAETIALVL PDTTSTNDTS
110 120 130 140 150
LSDWIAALRA LSEADDAQRK AFVRDAWAEL GGTERFVFNK LITGGFRLGI
160 170 180 190 200
SQKLMTRALS KATGKPETEL AHRLMGNWHP DDTTWDVLIE ADDPMADASR
210 220 230 240 250
PYPFYLSYGL EGAVEDLGAP SEWVAEWKWD GIRGQLILRD GQYFVWSRGE
260 270 280 290 300
ELMTDRFPEL AQAVDFFPAG TVLDGELLVW EAGADAPSSF NALQKRIGRK
310 320 330 340 350
TVPKKLLAEA PVVLHAYDVL EWQGVDIRQR PFAERRAILQ AACTALPATA
360 370 380 390 400
PIKLSPQLSF QDWDSLAQHR GAARDAQAEG VMLKRADSPY LVGRKKGDWW
410 420 430 440 450
KWKLDPLTID AVMIYAQAGH GRRANLFTDF TFAVRHGNDL VPFTKAYSGL
460 470 480 490 500
TDAEFRAITA WVRKNTLQRF GPVRQVTPHH VFEIAFEGIQ ASPRHKSGVA
510 520 530
LRFPRMARWR QDKPLQEANT LDDLKQMLEL YG
Length:532
Mass (Da):59,821
Last modified:September 21, 2011 - v1
Checksum:i957514065983B2D6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002623 Genomic DNA. Translation: AEI94860.1.
RefSeqiYP_004691823.1. NC_015730.1.

Genome annotation databases

EnsemblBacteriaiAEI94860; AEI94860; RLO149_c029030.
KEGGirli:RLO149_c029030.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002623 Genomic DNA. Translation: AEI94860.1.
RefSeqiYP_004691823.1. NC_015730.1.

3D structure databases

ProteinModelPortaliF7ZH18.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEI94860; AEI94860; RLO149_c029030.
KEGGirli:RLO149_c029030.

Phylogenomic databases

KOiK10747.

Enzyme and pathway databases

BioCyciRLIT391595:GJEH-2887-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Comparative genome analysis and genome-guided physiological analysis of Roseobacter litoralis."
    Kalhoefer D., Thole S., Voget S., Lehmann R., Liesegang H., Wollher A., Daniel R., Simon M., Brinkhoff T.
    BMC Genomics 12:324-324(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 49566 / DSM 6996 / JCM 21268 / NBRC 15278 / OCh 149Imported.

Entry informationi

Entry nameiF7ZH18_ROSLO
AccessioniPrimary (citable) accession number: F7ZH18
Entry historyi
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: April 29, 2015
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.