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F7Z7D1

- F7Z7D1_BACC6

UniProt

F7Z7D1 - F7Z7D1_BACC6

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Protein
Submitted name: DNA ligase D
Gene
ligD, BCO26_1265
Organism
Bacillus coagulans (strain 2-6)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBCOA941639:GHC1-1286-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Name:ligDImported
Ordered Locus Names:BCO26_1265Imported
OrganismiBacillus coagulans (strain 2-6)Imported
Taxonomic identifieri941639 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000005637: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F7Z7D1-1 [UniParc]FASTAAdd to Basket

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MKPMLPVLKW SLPDTGKWVY EIKYDGYRAI LDWTEDGMRL WSRNGKDLLP    50
RFPEIRTFLQ TLEGRVKGQL PLRLDGELVL LENPYKAGFR ELQRRGRMKA 100
EAAAEQAKMR PAHYLVFDLL MLGGEDMAGK PYLQRKKALE NLCETLALPL 150
SPAPGETARV QQIPFTRDAS VLKETVKNFN SEGIVAKQTD SKWEAGKRVE 200
TWIKVKNWKT AACFITAYDE KNGYFDVAVF KDGGIFPIGQ FLFSMNPDEK 250
QILAEAVRKN AANNENGVYT IDPSICVEVF YLEWDGANLR EPHFHRFRFD 300
LSPDACTFED FRLRNAAIPE EVEVTHPDKP LWKKRHVAKL DFLAYMREIS 350
PFMLPFLSDR LLTVIRYPHG VFGEAFYQKN CPDYAPAFVD TAMHEDIRYI 400
VCNHLKTLMW LANQLAVEYH IPFQTVNSRF VSEIVFDFDP PSRDAFQLAV 450
EAALLLKQVT DALHLESFVK ISGNKGLQVY IPLPDGQFSW EDTRLFTEFV 500
AAYFISKSPE HFTIERMKKK RGGKLYVDFV QHAEGKTIIA PYSMRGHEDA 550
LVAAPLFWEE VNASLSPYDF TIETVLSRVN RYGCPFARFF ACKSGQPFAP 600
VLAFLKQNKG RPI 613
Length:613
Mass (Da):70,411
Last modified:September 21, 2011 - v1
Checksum:iD8F26B8A539704D5
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002472 Genomic DNA. Translation: AEH53324.1.
RefSeqiWP_013859220.1. NC_015634.1.
YP_004568710.1. NC_015634.1.

Genome annotation databases

EnsemblBacteriaiAEH53324; AEH53324; BCO26_1265.
GeneIDi10764956.
KEGGibck:BCO26_1265.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002472 Genomic DNA. Translation: AEH53324.1 .
RefSeqi WP_013859220.1. NC_015634.1.
YP_004568710.1. NC_015634.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEH53324 ; AEH53324 ; BCO26_1265 .
GeneIDi 10764956.
KEGGi bck:BCO26_1265.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci BCOA941639:GHC1-1286-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of the thermophilic strain Bacillus coagulans 2-6, an efficient producer of high-optical-purity L-lactic acid."
    Su F., Yu B., Sun J., Ou H.Y., Zhao B., Wang L., Qin J., Tang H., Tao F., Jarek M., Scharfe M., Ma C., Ma Y., Xu P.
    J. Bacteriol. 193:4563-4564(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 2-6Imported.

Entry informationi

Entry nameiF7Z7D1_BACC6
AccessioniPrimary (citable) accession number: F7Z7D1
Entry historyi
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: September 3, 2014
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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