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F7Z7D1

- F7Z7D1_BACC6

UniProt

F7Z7D1 - F7Z7D1_BACC6

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Protein
Submitted name:

DNA ligase D

Gene

ligD

Organism
Bacillus coagulans (strain 2-6)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBCOA941639:GHC1-1286-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Name:ligDImported
Ordered Locus Names:BCO26_1265Imported
OrganismiBacillus coagulans (strain 2-6)Imported
Taxonomic identifieri941639 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000005637: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F7Z7D1-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MKPMLPVLKW SLPDTGKWVY EIKYDGYRAI LDWTEDGMRL WSRNGKDLLP
60 70 80 90 100
RFPEIRTFLQ TLEGRVKGQL PLRLDGELVL LENPYKAGFR ELQRRGRMKA
110 120 130 140 150
EAAAEQAKMR PAHYLVFDLL MLGGEDMAGK PYLQRKKALE NLCETLALPL
160 170 180 190 200
SPAPGETARV QQIPFTRDAS VLKETVKNFN SEGIVAKQTD SKWEAGKRVE
210 220 230 240 250
TWIKVKNWKT AACFITAYDE KNGYFDVAVF KDGGIFPIGQ FLFSMNPDEK
260 270 280 290 300
QILAEAVRKN AANNENGVYT IDPSICVEVF YLEWDGANLR EPHFHRFRFD
310 320 330 340 350
LSPDACTFED FRLRNAAIPE EVEVTHPDKP LWKKRHVAKL DFLAYMREIS
360 370 380 390 400
PFMLPFLSDR LLTVIRYPHG VFGEAFYQKN CPDYAPAFVD TAMHEDIRYI
410 420 430 440 450
VCNHLKTLMW LANQLAVEYH IPFQTVNSRF VSEIVFDFDP PSRDAFQLAV
460 470 480 490 500
EAALLLKQVT DALHLESFVK ISGNKGLQVY IPLPDGQFSW EDTRLFTEFV
510 520 530 540 550
AAYFISKSPE HFTIERMKKK RGGKLYVDFV QHAEGKTIIA PYSMRGHEDA
560 570 580 590 600
LVAAPLFWEE VNASLSPYDF TIETVLSRVN RYGCPFARFF ACKSGQPFAP
610
VLAFLKQNKG RPI
Length:613
Mass (Da):70,411
Last modified:September 21, 2011 - v1
Checksum:iD8F26B8A539704D5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002472 Genomic DNA. Translation: AEH53324.1.
RefSeqiWP_013859220.1. NC_015634.1.
YP_004568710.1. NC_015634.1.

Genome annotation databases

EnsemblBacteriaiAEH53324; AEH53324; BCO26_1265.
GeneIDi10764956.
KEGGibck:BCO26_1265.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002472 Genomic DNA. Translation: AEH53324.1 .
RefSeqi WP_013859220.1. NC_015634.1.
YP_004568710.1. NC_015634.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEH53324 ; AEH53324 ; BCO26_1265 .
GeneIDi 10764956.
KEGGi bck:BCO26_1265.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci BCOA941639:GHC1-1286-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of the thermophilic strain Bacillus coagulans 2-6, an efficient producer of high-optical-purity L-lactic acid."
    Su F., Yu B., Sun J., Ou H.Y., Zhao B., Wang L., Qin J., Tang H., Tao F., Jarek M., Scharfe M., Ma C., Ma Y., Xu P.
    J. Bacteriol. 193:4563-4564(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 2-6Imported.

Entry informationi

Entry nameiF7Z7D1_BACC6
AccessioniPrimary (citable) accession number: F7Z7D1
Entry historyi
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: October 1, 2014
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3