Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

F7Z7D1

- F7Z7D1_BACC6

UniProt

F7Z7D1 - F7Z7D1_BACC6

Protein
Submitted name:

DNA ligase D

Gene

ligD

Organism
Bacillus coagulans (strain 2-6)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 13 (01 Oct 2014)
      Sequence version 1 (21 Sep 2011)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciBCOA941639:GHC1-1286-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Name:ligDImported
    Ordered Locus Names:BCO26_1265Imported
    OrganismiBacillus coagulans (strain 2-6)Imported
    Taxonomic identifieri941639 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
    ProteomesiUP000005637: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F7Z7D1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKPMLPVLKW SLPDTGKWVY EIKYDGYRAI LDWTEDGMRL WSRNGKDLLP    50
    RFPEIRTFLQ TLEGRVKGQL PLRLDGELVL LENPYKAGFR ELQRRGRMKA 100
    EAAAEQAKMR PAHYLVFDLL MLGGEDMAGK PYLQRKKALE NLCETLALPL 150
    SPAPGETARV QQIPFTRDAS VLKETVKNFN SEGIVAKQTD SKWEAGKRVE 200
    TWIKVKNWKT AACFITAYDE KNGYFDVAVF KDGGIFPIGQ FLFSMNPDEK 250
    QILAEAVRKN AANNENGVYT IDPSICVEVF YLEWDGANLR EPHFHRFRFD 300
    LSPDACTFED FRLRNAAIPE EVEVTHPDKP LWKKRHVAKL DFLAYMREIS 350
    PFMLPFLSDR LLTVIRYPHG VFGEAFYQKN CPDYAPAFVD TAMHEDIRYI 400
    VCNHLKTLMW LANQLAVEYH IPFQTVNSRF VSEIVFDFDP PSRDAFQLAV 450
    EAALLLKQVT DALHLESFVK ISGNKGLQVY IPLPDGQFSW EDTRLFTEFV 500
    AAYFISKSPE HFTIERMKKK RGGKLYVDFV QHAEGKTIIA PYSMRGHEDA 550
    LVAAPLFWEE VNASLSPYDF TIETVLSRVN RYGCPFARFF ACKSGQPFAP 600
    VLAFLKQNKG RPI 613
    Length:613
    Mass (Da):70,411
    Last modified:September 21, 2011 - v1
    Checksum:iD8F26B8A539704D5
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002472 Genomic DNA. Translation: AEH53324.1.
    RefSeqiWP_013859220.1. NC_015634.1.
    YP_004568710.1. NC_015634.1.

    Genome annotation databases

    EnsemblBacteriaiAEH53324; AEH53324; BCO26_1265.
    GeneIDi10764956.
    KEGGibck:BCO26_1265.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002472 Genomic DNA. Translation: AEH53324.1 .
    RefSeqi WP_013859220.1. NC_015634.1.
    YP_004568710.1. NC_015634.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEH53324 ; AEH53324 ; BCO26_1265 .
    GeneIDi 10764956.
    KEGGi bck:BCO26_1265.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci BCOA941639:GHC1-1286-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the thermophilic strain Bacillus coagulans 2-6, an efficient producer of high-optical-purity L-lactic acid."
      Su F., Yu B., Sun J., Ou H.Y., Zhao B., Wang L., Qin J., Tang H., Tao F., Jarek M., Scharfe M., Ma C., Ma Y., Xu P.
      J. Bacteriol. 193:4563-4564(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 2-6Imported.

    Entry informationi

    Entry nameiF7Z7D1_BACC6
    AccessioniPrimary (citable) accession number: F7Z7D1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 21, 2011
    Last sequence update: September 21, 2011
    Last modified: October 1, 2014
    This is version 13 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3