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F7Z7D1 (F7Z7D1_BACC6) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 11. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:ligD EMBL AEH53324.1
Ordered Locus Names:BCO26_1265 EMBL AEH53324.1
OrganismBacillus coagulans (strain 2-6) [Complete proteome] [HAMAP] EMBL AEH53324.1
Taxonomic identifier941639 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus

Protein attributes

Sequence length613 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
F7Z7D1 [UniParc].

Last modified September 21, 2011. Version 1.
Checksum: D8F26B8A539704D5

FASTA61370,411
        10         20         30         40         50         60 
MKPMLPVLKW SLPDTGKWVY EIKYDGYRAI LDWTEDGMRL WSRNGKDLLP RFPEIRTFLQ 

        70         80         90        100        110        120 
TLEGRVKGQL PLRLDGELVL LENPYKAGFR ELQRRGRMKA EAAAEQAKMR PAHYLVFDLL 

       130        140        150        160        170        180 
MLGGEDMAGK PYLQRKKALE NLCETLALPL SPAPGETARV QQIPFTRDAS VLKETVKNFN 

       190        200        210        220        230        240 
SEGIVAKQTD SKWEAGKRVE TWIKVKNWKT AACFITAYDE KNGYFDVAVF KDGGIFPIGQ 

       250        260        270        280        290        300 
FLFSMNPDEK QILAEAVRKN AANNENGVYT IDPSICVEVF YLEWDGANLR EPHFHRFRFD 

       310        320        330        340        350        360 
LSPDACTFED FRLRNAAIPE EVEVTHPDKP LWKKRHVAKL DFLAYMREIS PFMLPFLSDR 

       370        380        390        400        410        420 
LLTVIRYPHG VFGEAFYQKN CPDYAPAFVD TAMHEDIRYI VCNHLKTLMW LANQLAVEYH 

       430        440        450        460        470        480 
IPFQTVNSRF VSEIVFDFDP PSRDAFQLAV EAALLLKQVT DALHLESFVK ISGNKGLQVY 

       490        500        510        520        530        540 
IPLPDGQFSW EDTRLFTEFV AAYFISKSPE HFTIERMKKK RGGKLYVDFV QHAEGKTIIA 

       550        560        570        580        590        600 
PYSMRGHEDA LVAAPLFWEE VNASLSPYDF TIETVLSRVN RYGCPFARFF ACKSGQPFAP 

       610 
VLAFLKQNKG RPI 

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References

[1]"Genome sequence of the thermophilic strain Bacillus coagulans 2-6, an efficient producer of high-optical-purity L-lactic acid."
Su F., Yu B., Sun J., Ou H.Y., Zhao B., Wang L., Qin J., Tang H., Tao F., Jarek M., Scharfe M., Ma C., Ma Y., Xu P.
J. Bacteriol. 193:4563-4564(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 2-6 EMBL AEH53324.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002472 Genomic DNA. Translation: AEH53324.1.
RefSeqYP_004568710.1. NC_015634.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEH53324; AEH53324; BCO26_1265.
GeneID10764956.
KEGGbck:BCO26_1265.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycBCOA941639:GHC1-1286-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
TIGRFAMsTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF7Z7D1_BACC6
AccessionPrimary (citable) accession number: F7Z7D1
Entry history
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: April 3, 2013
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)