F7Z1D5 (F7Z1D5_BACC6) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
30S ribosomal protein S5 HAMAP-Rule MF_01307

Gene names

Name:	rpsE HAMAP-Rule MF_01307 EMBL AEH52194.1
Ordered Locus Names:	BCO26_0135 EMBL AEH52194.1

Organism

Bacillus coagulans (strain 2-6) [Complete proteome] [HAMAP] EMBL AEH52194.1

Taxonomic identifier

941639 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Bacilli › Bacillales › Bacillaceae › Bacillus › Bacillus coagulans

Protein attributes

Sequence length	166 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body By similarity. SAAS SAAS005712 HAMAP-Rule MF_01307 With S4 and S12 plays an important role in translational accuracy By similarity. SAAS SAAS005712 HAMAP-Rule MF_01307
Subunit structure	Part of the 30S ribosomal subunit. Contacts proteins S4 and S8 By similarity. SAAS SAAS005712 HAMAP-Rule MF_01307
Domain	The N-terminal domain interacts with the head of the 30S subunit; the C-terminal domain interacts with the body and contacts protein S4. The interaction surface between S4 and S5 is involved in control of translational fidelity By similarity. HAMAP-Rule MF_01307
Sequence similarities	Belongs to the ribosomal protein S5P family. RuleBase RU003823 HAMAP-Rule MF_01307 Contains 1 S5 DRBM domain. SAAS SAAS005712 HAMAP-Rule MF_01307

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding SAAS SAAS005712 HAMAP-Rule MF_01307
Molecular function	Ribonucleoprotein Ribosomal protein RuleBase RU003823 SAAS SAAS005712 HAMAP-Rule MF_01307 EMBL AEH52194.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	small ribosomal subunit Inferred from electronic annotation. Source: InterPro
Molecular_function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Regions
	Domain	11 – 74	64	S5 DRBM By similarity HAMAP-Rule MF_01307

Sequences

	Sequence		Length	Mass (Da)
	F7Z1D5 [UniParc]. Last modified September 21, 2011. Version 1. Checksum: 85270B23BFFB4A43	FASTA	166	17,616
	10 20 30 40 50 60 MLRIDPNKLE LEERVVTINR VAKVVKGGRR FRFSALVVVG DRNGHVGFGT GKAQEVPDAI 70 80 90 100 110 120 RKAVEDAKKN LVEVPIAGTT IPHEVVGHFG AGKILLKPGS PGTGVIAGGP VRAILELAGI 130 140 150 160 ADITSKSLGS NTPINMIRAT MDGIKQLKRA DEVAKLRNKS VEELLG

References

[1]

"Genome sequence of the thermophilic strain Bacillus coagulans 2-6, an efficient producer of high-optical-purity L-lactic acid." Su F., Yu B., Sun J., Ou H.Y., Zhao B., Wang L., Qin J., Tang H., Tao F., Jarek M., Scharfe M., Ma C., Ma Y., Xu P. J. Bacteriol. 193:4563-4564(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 2-6 EMBL AEH52194.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002472 Genomic DNA. Translation: AEH52194.1.
RefSeq	YP_004567580.1. NC_015634.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEH52194; AEH52194; BCO26_0135.
GeneID	10763812.
KEGG	bck:BCO26_0135.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K02988.
Enzyme and pathway databases
BioCyc	BCOA941639:GHC1-142-MONOMER.
Family and domain databases
Gene3D	3.30.160.20. 1 hit. 3.30.230.10. 1 hit.
HAMAP	MF_01307_B. Ribosomal_S5_B.
InterPro	IPR014720. dsRNA-bd-like_dom. IPR000851. Ribosomal_S5. IPR005712. Ribosomal_S5_bac-type. IPR005324. Ribosomal_S5_C. IPR020568. Ribosomal_S5_D2-typ_fold. IPR014721. Ribosomal_S5_D2-typ_fold_subgr. IPR013810. Ribosomal_S5_N. IPR018192. Ribosomal_S5_N_CS. [Graphical view]
PANTHER	PTHR13718. PTHR13718. 1 hit.
Pfam	PF00333. Ribosomal_S5. 1 hit. PF03719. Ribosomal_S5_C. 1 hit. [Graphical view]
SUPFAM	SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit.
TIGRFAMs	TIGR01021. rpsE_bact. 1 hit.
PROSITE	PS00585. RIBOSOMAL_S5. 1 hit. PS50881. S5_DSRBD. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F7Z1D5_BACC6

Accession

Primary (citable) accession number: F7Z1D5

Entry history

Integrated into UniProtKB/TrEMBL:	September 21, 2011
Last sequence update:	September 21, 2011
Last modified:	April 3, 2013
This is version 14 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)