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F7XW13 (F7XW13_MIDMI) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 20. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Elongation factor Tu HAMAP-Rule MF_00118

Short name=EF-Tu HAMAP-Rule MF_00118
Gene names
Name:tufB EMBL AEI88862.1
Synonyms:tuf HAMAP-Rule MF_00118
Ordered Locus Names:midi_00560 EMBL AEI88862.1
OrganismMidichloria mitochondrii (strain IricVA) [Complete proteome] [HAMAP] EMBL AEI88862.1
Taxonomic identifier696127 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRickettsialesCandidatus MidichloriaceaeCandidatus Midichloria

Protein attributes

Sequence length392 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. HAMAP-Rule MF_00118 RuleBase RU000325

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00118

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00118.

Sequence similarities

Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. HAMAP-Rule MF_00118 RuleBase RU000325

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding19 – 268GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding76 – 805GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding131 – 1344GTP By similarity HAMAP-Rule MF_00118

Sequences

Sequence LengthMass (Da)Tools
F7XW13 [UniParc].

Last modified September 21, 2011. Version 1.
Checksum: ADCED9395F4EC06F

FASTA39243,088
        10         20         30         40         50         60 
MAKEKFVRNK PHVNIGTIGH VDHGKTSLTA ALTKMFGRYV KYDEIDKAPE EKARGITINS 

        70         80         90        100        110        120 
AHVEYETENR HYAHVDCPGH ADYVKNMITG AAQMDGAILV VSAADGPMPQ TREHILLARQ 

       130        140        150        160        170        180 
VGVPALVVFL NKVDMVDDPE LLELVEMEVR DLLNQYGFPG DQIPVIKGSA LMALEGKNPA 

       190        200        210        220        230        240 
LGEEAIKELM KQVDEYIPLP TRSVDKPFLM PVEDVFSISG RGTVATGRVE QGVVKVGEEI 

       250        260        270        280        290        300 
EIVGLKAQSS KTTCTGVEMF RRLLDQGEAG DNVGLLLRGI ERDQIERGQV LAKPGTIKPH 

       310        320        330        340        350        360 
KKFRAEVYIL KKEEGGRHTP FVSNYRPQFY FRTTDVTGTI NLKAGVEMVM PGDNTEIMVE 

       370        380        390 
LISPIAMDKG LKFAIREGGR TVGAGVVAEI IE 

« Hide

References

[1]"Phylogenomic evidence for the presence of a flagellum and cbb(3) oxidase in the free-living mitochondrial ancestor."
Sassera D., Lo N., Epis S., D'Auria G., Montagna M., Comandatore F., Horner D., Pereto J., Luciano A.M., Franciosi F., Ferri E., Crotti E., Bazzocchi C., Daffonchio D., Sacchi L., Moya A., Latorre A., Bandi C.
Mol. Biol. Evol. 28:3285-3296(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: IricVA EMBL AEI88862.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002130 Genomic DNA. Translation: AEI88862.1.
RefSeqYP_004679548.1. NC_015722.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEI88862; AEI88862; midi_00560.
GeneID10914283.
KEGGmmn:midi_00560.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK02358.
OMADFKAYDQ.

Enzyme and pathway databases

BioCycMMIT696127:GI3H-560-MONOMER.

Family and domain databases

Gene3D3.40.50.300. 1 hit.
HAMAPMF_00118_B. EF_Tu_B.
InterProIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSPR00315. ELONGATNFCT.
SUPFAMSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF7XW13_MIDMI
AccessionPrimary (citable) accession number: F7XW13
Entry history
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: June 11, 2014
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)