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F7XUC3 (F7XUC3_MIDMI) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 15. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
D-alanine-D-alanine ligase EMBL AEI89482.1
EC=6.3.2.4 EMBL AEI89482.1
Gene names
Name:ddlA EMBL AEI89482.1
Ordered Locus Names:midi_01206
OrganismMidichloria mitochondrii (strain IricVA) [Complete proteome] [HAMAP] EMBL AEI89482.1
Taxonomic identifier696127 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rickettsiales › Candidatus Midichloria ›

Protein attributes

Sequence length575 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Cell wall formation By similarity. SAAS SAAS005905

Catalytic activity

ATP + 2 D-alanine = ADP + phosphate + D-alanyl-D-alanine. SAAS SAAS005905

Cofactor

Binds 2 magnesium or manganese ions per subunit By similarity. SAAS SAAS005905

Pathway

Cell wall biogenesis; peptidoglycan biosynthesis. SAAS SAAS005905

Subcellular location

Cytoplasm By similarity SAAS SAAS005905.

Sequence similarities

Contains 1 ATP-grasp domain. SAAS SAAS005905

Sequences

Sequence LengthMass (Da)Tools
F7XUC3 [UniParc].

Last modified September 21, 2011. Version 1.
Checksum: 8635E4385156424D

FASTA57564,744
        10         20         30         40         50         60 
MNKHIVLLVG GVSREREVSQ ISGESVRNAL LSLGYRVTVV DPSENLASEL IKLRPDIVFN 

        70         80         90        100        110        120 
CLHGTFGEGG SIPGLLELLR IPYTHSGVTA SAIAMDKILT KKMAQTCDIN TPKYVKIEKS 

       130        140        150        160        170        180 
ALFTMLEKGE DPMPKPYVIK AVQQGSSIGI YLVIDENSDK PKKAEWTFGE QILVEEYIPG 

       190        200        210        220        230        240 
QELSVAVLND KALGVLELRP KTNFYDYTAK YSDGVTEHVH PAEIPQEVYL EAMKRAEEMH 

       250        260        270        280        290        300 
KALGCRTVSR SDFRYNNIGS ADGLFFLEIN THPGFTNLSI VPDIASRRGI SFEQIIEQLL 

       310        320        330        340        350        360 
KDAKMRNNAV KIAKYTYLDT DVHYGKQISS LLQPAREKPF KKIIRVYILF LLGVAAIFYI 

       370        380        390        400        410        420 
LTKLCTNEVD QFVDKLINKT VISELNICGN IQVSKEEIIN TLDLSLPLEV SYINASHIKE 

       430        440        450        460        470        480 
ELLKNPLIKD VEVKINLPNI LSLLVTERQP FALWFDQKQF HLIDEEGFIV KACVEFQEKE 

       490        500        510        520        530        540 
NKYIIAAGTD SNNQLQNLLD ELKGYSISKK LFAVQLISNR RWNILLKNGL IVKLPENNVK 

       550        560        570 
EALVALDLVL ENYSPSKPFN IIDLRLAPGK VYAVF

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References

[1]"Phylogenomic evidence for the presence of a flagellum and cbb3 oxidase in the free-living mitochondrial ancestor."
Sassera D., Lo N., Epis S., D'Auria G., Montagna M., Comandatore F., Horner D., Pereto J., Luciano A.M., Franciosi F., Ferri E., Crotti E., Bazzocchi C., Daffonchio D., Sacchi L., Moya A., Latorre A., Bandi C.
Mol. Biol. Evol. 28:3285-3296(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: IricVA.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002130 Genomic DNA. Translation: AEI89482.1.
RefSeqYP_004680168.1. NC_015722.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEI89482; AEI89482; midi_01206.
GeneID10914928.
KEGGmmn:midi_01206.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01921.

Enzyme and pathway databases

BioCycMMIT696127:GI3H-1205-MONOMER.
UniPathwayUPA00219.

Family and domain databases

Gene3D3.30.1490.20. 1 hit.
3.30.470.20. 2 hits.
3.40.50.20. 1 hit.
HAMAPMF_00047. Dala_Dala_lig.
InterProIPR011761. ATP-grasp.
IPR013815. ATP_grasp_subdomain_1.
IPR013816. ATP_grasp_subdomain_2.
IPR005548. Cell_div_FtsQ/DivIB.
IPR005905. D_ala_D_ala.
IPR011095. Dala_Dala_lig_C.
IPR011127. Dala_Dala_lig_N.
IPR013685. POTRA_FtsQ_type.
IPR016185. PreATP-grasp_dom.
[Graphical view]
PANTHERPTHR23132. PTHR23132. 1 hit.
PfamPF07478. Dala_Dala_lig_C. 1 hit.
PF01820. Dala_Dala_lig_N. 2 hits.
PF03799. FtsQ. 1 hit.
PF08478. POTRA_1. 1 hit.
[Graphical view]
SUPFAMSSF52440. PreATP-grasp-like. 1 hit.
TIGRFAMsTIGR01205. D_ala_D_alaTIGR. 1 hit.
PROSITEPS50975. ATP_GRASP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF7XUC3_MIDMI
AccessionPrimary (citable) accession number: F7XUC3
Entry history
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: April 3, 2013
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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