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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Mzhil_0017

Organism
Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) (Methanohalophilus zhilinae)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMZHI679901:GHPZ-17-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Mzhil_0017Imported
OrganismiMethanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) (Methanohalophilus zhilinae)Imported
Taxonomic identifieri679901 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanomicrobiaMethanosarcinalesMethanosarcinaceaeMethanosalsum
Proteomesi
  • UP000006622 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi679901.Mzhil_0017.

Structurei

3D structure databases

ProteinModelPortaliF7XMH5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini97 – 245RNA_ligaseInterPro annotationAdd BLAST149

Phylogenomic databases

eggNOGiarCOG04218. Archaea.
COG1423. LUCA.
KOiK07468.
OMAiICPFTTK.

Family and domain databases

CDDicd07894. Adenylation_RNA_ligase. 1 hit.
InterProiIPR021122. RNA_ligase_dom_REL/Rnl2.
IPR001072. Uncharacterised_MJ0414.
[Graphical view]
PfamiPF09414. RNA_ligase. 1 hit.
[Graphical view]
PRINTSiPR01048. Y414FAMILY.
TIGRFAMsiTIGR01209. TIGR01209. 1 hit.

Sequencei

Sequence statusi: Complete.

F7XMH5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKKTDQKIP LDINKTASYL DISEKRLEKL IERRILTANW GKYRQLLRFD
60 70 80 90 100
KKVSHIEEGS VLNQQSNELE LVRGFPKIRR ALLLESAIIK NFETADSVAI
110 120 130 140 150
EEKMNGYNVR AAEINGEVLA FTRGGLVCPY TTEKVRELIN LDFFRDHPDL
160 170 180 190 200
VLCAEMVGPD NPYVPKDIYN IDSLQFFVFD IRKKNTGKPY SIDEKRKLAD
210 220 230 240 250
EYGLAQVKFF GEYPVRDASQ KIMKIIEELG KDKREGVVVK DPEMVLQPMK
260 270 280 290 300
YTTSQSNCAD LEHAFKFYND TGRDYLFSRI VREGFQSVEW NENDEELQKR
310 320 330 340 350
CIQLGQSILI PMVETINKVG CGERITDDVQ IRVKSLHTAG KFKNYLQRLG
360 370 380
VEAVFEEPVK EDDQYLVRIK KLNKSTNDKT ESIWKGDYW
Length:389
Mass (Da):45,135
Last modified:September 21, 2011 - v1
Checksum:i9523C3A2A7A10AE2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002101 Genomic DNA. Translation: AEH59898.1.

Genome annotation databases

EnsemblBacteriaiAEH59898; AEH59898; Mzhil_0017.
KEGGimzh:Mzhil_0017.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002101 Genomic DNA. Translation: AEH59898.1.

3D structure databases

ProteinModelPortaliF7XMH5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi679901.Mzhil_0017.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEH59898; AEH59898; Mzhil_0017.
KEGGimzh:Mzhil_0017.

Phylogenomic databases

eggNOGiarCOG04218. Archaea.
COG1423. LUCA.
KOiK07468.
OMAiICPFTTK.

Enzyme and pathway databases

BioCyciMZHI679901:GHPZ-17-MONOMER.

Family and domain databases

CDDicd07894. Adenylation_RNA_ligase. 1 hit.
InterProiIPR021122. RNA_ligase_dom_REL/Rnl2.
IPR001072. Uncharacterised_MJ0414.
[Graphical view]
PfamiPF09414. RNA_ligase. 1 hit.
[Graphical view]
PRINTSiPR01048. Y414FAMILY.
TIGRFAMsiTIGR01209. TIGR01209. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiF7XMH5_METZD
AccessioniPrimary (citable) accession number: F7XMH5
Entry historyi
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: November 2, 2016
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.