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F7XL21

- F7XL21_METZD

UniProt

F7XL21 - F7XL21_METZD

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Protein

DNA ligase

Gene

lig

Organism
Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) (Methanohalophilus zhilinae)
Status
Unreviewed - Annotation score: 3 out of 5- Protein inferred from homologyi

Functioni

DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.UniRule annotation

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

Cofactori

Note: Divalent metal cations.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei254 – 2541ATPUniRule annotation
Active sitei256 – 2561N6-AMP-lysine intermediateUniRule annotation
Binding sitei261 – 2611ATPUniRule annotation
Binding sitei276 – 2761ATPUniRule annotation
Binding sitei306 – 3061ATPUniRule annotation
Binding sitei346 – 3461ATPUniRule annotation
Binding sitei421 – 4211ATPUniRule annotation
Binding sitei427 – 4271ATPUniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-HAMAP
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-HAMAP
  4. metal ion binding Source: UniProtKB-KW

GO - Biological processi

  1. cell cycle Source: UniProtKB-KW
  2. cell division Source: UniProtKB-KW
  3. DNA biosynthetic process Source: InterPro
  4. DNA recombination Source: UniProtKB-HAMAP
  5. DNA repair Source: UniProtKB-HAMAP
  6. DNA replication Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotationImported

Keywords - Biological processi

Cell cycle, Cell divisionUniRule annotation, DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Metal-bindingUniRule annotation, Nucleotide-binding

Enzyme and pathway databases

BioCyciMZHI679901:GHPZ-902-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Alternative name(s):
Polydeoxyribonucleotide synthase [ATP]UniRule annotation
Gene namesi
Name:ligUniRule annotation
Ordered Locus Names:Mzhil_0867Imported
OrganismiMethanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) (Methanohalophilus zhilinae)Imported
Taxonomic identifieri679901 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanomicrobiaMethanosarcinalesMethanosarcinaceaeMethanosalsum
ProteomesiUP000006622: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF7XL21.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

KOiK10747.
OMAiARVQVHK.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
HAMAPiMF_00407. DNA_ligase.
InterProiIPR022865. DNA_ligae_ATP-dep_bac/arc.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F7XL21-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTAFKEFAHV CSQIENTSSS LEITDMVAEF FRIVDTEELP VVIHFIMGEV
60 70 80 90 100
FPAWSEEELG IGKGLYYTSL SKVSGLSVDE IKEIVRKTGD IGKTTIEVMK
110 120 130 140 150
NKSGDQVTFS VFFDDNTQLS IIDVYEALKK IAAINGKGSQ NIKMKNLQYI
160 170 180 190 200
FSKASPQESQ YMARLVLEEL RIGVGEGIVR DAIALAFDVP AESIERGFML
210 220 230 240 250
TNDMGAVGLA AKKGGIEEVE KLNMELNRPI KLMLAQVTPS IKTAIEEMEE
260 270 280 290 300
AAIEWKFDGA RLQVHKDKDK VSIYSRKLEN ITNSLPDVVS AVKEYVNADT
310 320 330 340 350
AILDGEAFAV DENGKPKPFQ EILKRLRRKY DIEITTRDIP LTVKFFDIMY
360 370 380 390 400
LNGDYLIDLS LIERRRLLGE CVRNSNSITV DQQVVTDDPE IGEKIYSEAI
410 420 430 440 450
RAGHEGIMIK NPQSPYTPGK RGKNWLKKKP VMETLDLVVI GGEWGYGRRT
460 470 480 490 500
NFIGSYTLSC YDPDSGNFLP IGKVGTGITD ENLVELTGLF SDLIVVESGR
510 520 530 540 550
DLEFKPEIVF EVAFEEIQKS TNYESGYALR FPRLVSIRDD KSPHEADTIS
560
RVDEIYRSQR K
Length:561
Mass (Da):63,050
Last modified:September 21, 2011 - v1
Checksum:iD1AF3543A6495D18
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002101 Genomic DNA. Translation: AEH60729.1.
RefSeqiYP_004615948.1. NC_015676.1.

Genome annotation databases

EnsemblBacteriaiAEH60729; AEH60729; Mzhil_0867.
GeneIDi10822488.
KEGGimzh:Mzhil_0867.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002101 Genomic DNA. Translation: AEH60729.1 .
RefSeqi YP_004615948.1. NC_015676.1.

3D structure databases

ProteinModelPortali F7XL21.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEH60729 ; AEH60729 ; Mzhil_0867 .
GeneIDi 10822488.
KEGGi mzh:Mzhil_0867.

Phylogenomic databases

KOi K10747.
OMAi ARVQVHK.

Enzyme and pathway databases

BioCyci MZHI679901:GHPZ-902-MONOMER.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
HAMAPi MF_00407. DNA_ligase.
InterProi IPR022865. DNA_ligae_ATP-dep_bac/arc.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 4017 / NBRC 107636 / OCM 62 / WeN5Imported.

Entry informationi

Entry nameiF7XL21_METZD
AccessioniPrimary (citable) accession number: F7XL21
Entry historyi
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: November 26, 2014
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3