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F7XHX2

- F7XHX2_SINMM

UniProt

F7XHX2 - F7XHX2_SINMM

Protein
Submitted name:

Putative DNA ligase

Gene

ligC

Organism
Sinorhizobium meliloti (strain SM11)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 19 (01 Oct 2014)
      Sequence version 1 (21 Sep 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciSMEL707241:GLKB-5646-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative DNA ligaseImported
    Gene namesi
    Name:ligCImported
    Ordered Locus Names:SM11_pD0039Imported
    Encoded oniPlasmid pSmeSM11dImported
    OrganismiSinorhizobium meliloti (strain SM11)Imported
    Taxonomic identifieri707241 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
    ProteomesiUP000009045: Plasmid pSmeSM11d

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F7XHX2-1 [UniParc]FASTAAdd to Basket

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    MASSAHGKPT KKAAPSSAAK KAGGFPLPVS TAPMEARSAT ELPGGDAWQY    50
    EPKWDGFRCL AFKSGDEVDI RAKSGKPLGR FFPEIVALLR RLEPDMFVLD 100
    GELVIEVDGR LSFDALQMRL HPAASRVQKL SQETPAKLIL FDMLAGTDGT 150
    ILTGEPLQTR RACLETFAKK NAVAEMLESS PFTLDIEEAE RWLTSWEAGA 200
    TDGVVAKRRD GAYECGERAM VKVKRLKTAD CVVGGFRYES DSSLVGSLLL 250
    GLYDTEGLLN HVGFTATISD KERPALTNQL EALREPPGFT GKAPGGPSRW 300
    SSERSGEWEP VRPELVVEVR FDHVSNRRFR HGTKLMRWRP DKDPRQCTYQ 350
    QIMPS 355
    Length:355
    Mass (Da):39,210
    Last modified:September 21, 2011 - v1
    Checksum:i13A5A00D54494368
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001832 Genomic DNA. Translation: AEH82872.1.
    RefSeqiYP_005722373.1. NC_017326.1.

    Genome annotation databases

    EnsemblBacteriaiAEH82872; AEH82872; SM11_pD0039.
    GeneIDi12313228.
    KEGGismx:SM11_pD0039.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001832 Genomic DNA. Translation: AEH82872.1 .
    RefSeqi YP_005722373.1. NC_017326.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEH82872 ; AEH82872 ; SM11_pD0039 .
    GeneIDi 12313228.
    KEGGi smx:SM11_pD0039.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci SMEL707241:GLKB-5646-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome."
      Schneiker-Bekel S., Wibberg D., Bekel T., Blom J., Linke B., Neuweger H., Stiens M., Vorholter F.J., Weidner S., Goesmann A., Puhler A., Schluter A.
      J. Biotechnol. 155:20-33(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

    Entry informationi

    Entry nameiF7XHX2_SINMM
    AccessioniPrimary (citable) accession number: F7XHX2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 21, 2011
    Last sequence update: September 21, 2011
    Last modified: October 1, 2014
    This is version 19 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported, PlasmidImported

    External Data

    Dasty 3