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F7XHX2 (F7XHX2_SINMM) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 18. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:ligC EMBL AEH82872.1
Ordered Locus Names:SM11_pD0039 EMBL AEH82872.1
Encoded onPlasmid pSmeSM11d Ref.1 EMBL AEH82872.1
OrganismSinorhizobium meliloti (strain SM11) [Complete proteome] [HAMAP] EMBL AEH82872.1
Taxonomic identifier707241 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length355 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AEH82872.1
   Technical termComplete proteome
Plasmid EMBL AEH82872.1
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
F7XHX2 [UniParc].

Last modified September 21, 2011. Version 1.
Checksum: 13A5A00D54494368

FASTA35539,210
        10         20         30         40         50         60 
MASSAHGKPT KKAAPSSAAK KAGGFPLPVS TAPMEARSAT ELPGGDAWQY EPKWDGFRCL 

        70         80         90        100        110        120 
AFKSGDEVDI RAKSGKPLGR FFPEIVALLR RLEPDMFVLD GELVIEVDGR LSFDALQMRL 

       130        140        150        160        170        180 
HPAASRVQKL SQETPAKLIL FDMLAGTDGT ILTGEPLQTR RACLETFAKK NAVAEMLESS 

       190        200        210        220        230        240 
PFTLDIEEAE RWLTSWEAGA TDGVVAKRRD GAYECGERAM VKVKRLKTAD CVVGGFRYES 

       250        260        270        280        290        300 
DSSLVGSLLL GLYDTEGLLN HVGFTATISD KERPALTNQL EALREPPGFT GKAPGGPSRW 

       310        320        330        340        350 
SSERSGEWEP VRPELVVEVR FDHVSNRRFR HGTKLMRWRP DKDPRQCTYQ QIMPS 

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References

[1]"The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome."
Schneiker-Bekel S., Wibberg D., Bekel T., Blom J., Linke B., Neuweger H., Stiens M., Vorholter F.J., Weidner S., Goesmann A., Puhler A., Schluter A.
J. Biotechnol. 155:20-33(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: SM11 EMBL AEH82872.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001832 Genomic DNA. Translation: AEH82872.1.
RefSeqYP_005722373.1. NC_017326.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEH82872; AEH82872; SM11_pD0039.
GeneID12313228.
KEGGsmx:SM11_pD0039.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycSMEL707241:GLKB-5646-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF7XHX2_SINMM
AccessionPrimary (citable) accession number: F7XHX2
Entry history
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: April 16, 2014
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)