Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

F7XBW7 (F7XBW7_SINMM) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 16. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
Ordered Locus Names:SM11_pC1481 EMBL AEH82554.1
Encoded onPlasmid pSmeSM11c Ref.1 EMBL AEH82554.1
OrganismSinorhizobium meliloti (strain SM11) [Complete proteome] [HAMAP] EMBL AEH82554.1
Taxonomic identifier707241 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length314 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AEH82554.1
   Technical termComplete proteome
Plasmid EMBL AEH82554.1
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
F7XBW7 [UniParc].

Last modified September 21, 2011. Version 1.
Checksum: DDDF01C81518DC81

FASTA31434,415
        10         20         30         40         50         60 
MSRRAKPLLQ DDSVAKSKPA RPRDPAQPNL PFDPMPERIE PCLALLKPVP PKGPDWVFEV 

        70         80         90        100        110        120 
KWDGYRLAIH IEPKGVRIIT RGGHDWTHHF PAIAEATSKL GVGTAILDGE AVVLDEEGRS 

       130        140        150        160        170        180 
DFGALQRSLG GRGGKRSSTE SVFFAFDLLY FDGHDLSGTE LSVRRHLLEG FLDGPTGAIQ 

       190        200        210        220        230        240 
SSEEVFGDGA LLEKACSMGL EGIIAKHRDR PYRSGRTGDW LKIKCLQSES FMIVGYEQSL 

       250        260        270        280        290        300 
TARGGLGSLL LAGRKGHDWI YVGSVGTGFN TKDAEYLRKT LDRLKTSKPA VPLKGKNLVF 

       310 
AQPTLIAEIE FRGP 

« Hide

References

[1]"The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome."
Schneiker-Bekel S., Wibberg D., Bekel T., Blom J., Linke B., Neuweger H., Stiens M., Vorholter F.J., Weidner S., Goesmann A., Puhler A., Schluter A.
J. Biotechnol. 155:20-33(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: SM11 EMBL AEH82554.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001831 Genomic DNA. Translation: AEH82554.1.
RefSeqYP_005725363.1. NC_017327.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEH82554; AEH82554; SM11_pC1481.
GeneID12315281.
KEGGsmx:SM11_pC1481.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycSMEL707241:GLKB-5327-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF7XBW7_SINMM
AccessionPrimary (citable) accession number: F7XBW7
Entry history
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: April 16, 2014
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)