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F7WFJ3

- F7WFJ3_MYCTC

UniProt

F7WFJ3 - F7WFJ3_MYCTC

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

ligC

Organism
Mycobacterium tuberculosis (strain CCDC5079)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 25 (01 Oct 2014)
      Sequence version 1 (21 Sep 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciMTUB443149:GLGT-3507-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported
    Submitted name:
    ATP-dependent DNA ligase ligCImported
    Gene namesi
    Name:ligCImported
    Ordered Locus Names:CCDC5079_3463Imported
    ORF Names:CFBS_3955Imported
    OrganismiMycobacterium tuberculosis (strain CCDC5079)Imported
    Taxonomic identifieri443149 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacteriumMycobacterium tuberculosis complex
    ProteomesiUP000000301: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliF7WFJ3.
    SMRiF7WFJ3. Positions 6-340.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.
    OMAiHERTADC.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F7WFJ3-1 [UniParc]FASTAAdd to Basket

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    MQLPVMPPVS PMLAKSVTAI PPDASYEPKW DGFRSICFRD GDQVELGSRN    50
    ERPMTRYFPE LVAAIRAELP HRCVIDGEII IATDHGLDFE ALQQRIHPAE 100
    SRVRMLADRT PASFIAFDLL ALGDDDYTGR PFSERRAALV DAVTGSGADA 150
    DLSIHVTPAT TDMATAQRWF SEFEGAGLDG VIAKPPHITY QPDKRVMFKI 200
    KHLRTADCVV AGYRVHKSGS DAIGSLLLGL YQEDGQLASV GVIGAFPMAE 250
    RRRLLTELQP LVTSFDDHPW NWAAHVAGQR TPRKNEFSRW NVGKDLSFVP 300
    LRPERVVEVR YDHMEGARFR HTAQFNRWRP DRDPRSCSYA QLERPLTVSL 350
    SDIVPGLR 358
    Length:358
    Mass (Da):40,141
    Last modified:September 21, 2011 - v1
    Checksum:i22DA33D1A56196BD
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001641 Genomic DNA. Translation: AEJ48652.1.
    CP002884 Genomic DNA. Translation: AGM02387.1.
    RefSeqiYP_005914885.1. NC_017523.1.
    YP_008008790.1. NC_021251.1.

    Genome annotation databases

    EnsemblBacteriaiAEJ48652; AEJ48652; CCDC5079_3463.
    AGM02387; AGM02387; CFBS_3955.
    GeneIDi12504985.
    15618168.
    KEGGimte:CCDC5079_3463.
    mtur:CFBS_3955.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001641 Genomic DNA. Translation: AEJ48652.1 .
    CP002884 Genomic DNA. Translation: AGM02387.1 .
    RefSeqi YP_005914885.1. NC_017523.1.
    YP_008008790.1. NC_021251.1.

    3D structure databases

    ProteinModelPortali F7WFJ3.
    SMRi F7WFJ3. Positions 6-340.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEJ48652 ; AEJ48652 ; CCDC5079_3463 .
    AGM02387 ; AGM02387 ; CFBS_3955 .
    GeneIDi 12504985.
    15618168.
    KEGGi mte:CCDC5079_3463.
    mtur:CFBS_3955.

    Phylogenomic databases

    KOi K01971.
    OMAi HERTADC.

    Enzyme and pathway databases

    BioCyci MTUB443149:GLGT-3507-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequences of Mycobacterium tuberculosis strains CCDC5079 and CCDC5080, which belong to the Beijing family."
      Zhang Y., Chen C., Liu J., Deng H., Pan A., Zhang L., Zhao X., Huang M., Lu B., Dong H., Du P., Chen W., Wan K.
      J. Bacteriol. 193:5591-5592(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: CCDC5079Imported.
    2. "ContigScape: a Cytoscape plugin facilitating microbial genome gap closing."
      Tang B., Wang Q., Yang M., Xie F., Zhu Y., Zhuo Y., Wang S., Gao H., Ding X., Zhang L., Zhao G., Zheng H.
      BMC Genomics 14:289-289(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: CCDC5079Imported.

    Entry informationi

    Entry nameiF7WFJ3_MYCTC
    AccessioniPrimary (citable) accession number: F7WFJ3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 21, 2011
    Last sequence update: September 21, 2011
    Last modified: October 1, 2014
    This is version 25 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3