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F7WFJ3

- F7WFJ3_MYCTC

UniProt

F7WFJ3 - F7WFJ3_MYCTC

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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

ligC

Organism
Mycobacterium tuberculosis (strain CCDC5079)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMTUB443149:GLGT-3507-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Submitted name:
ATP-dependent DNA ligase ligCImported
Gene namesi
Name:ligCImported
Ordered Locus Names:CCDC5079_3463Imported
ORF Names:CFBS_3955Imported
OrganismiMycobacterium tuberculosis (strain CCDC5079)Imported
Taxonomic identifieri443149 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacteriumMycobacterium tuberculosis complex
ProteomesiUP000000301: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF7WFJ3.
SMRiF7WFJ3. Positions 6-340.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiHERTADC.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F7WFJ3-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MQLPVMPPVS PMLAKSVTAI PPDASYEPKW DGFRSICFRD GDQVELGSRN
60 70 80 90 100
ERPMTRYFPE LVAAIRAELP HRCVIDGEII IATDHGLDFE ALQQRIHPAE
110 120 130 140 150
SRVRMLADRT PASFIAFDLL ALGDDDYTGR PFSERRAALV DAVTGSGADA
160 170 180 190 200
DLSIHVTPAT TDMATAQRWF SEFEGAGLDG VIAKPPHITY QPDKRVMFKI
210 220 230 240 250
KHLRTADCVV AGYRVHKSGS DAIGSLLLGL YQEDGQLASV GVIGAFPMAE
260 270 280 290 300
RRRLLTELQP LVTSFDDHPW NWAAHVAGQR TPRKNEFSRW NVGKDLSFVP
310 320 330 340 350
LRPERVVEVR YDHMEGARFR HTAQFNRWRP DRDPRSCSYA QLERPLTVSL

SDIVPGLR
Length:358
Mass (Da):40,141
Last modified:September 21, 2011 - v1
Checksum:i22DA33D1A56196BD
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001641 Genomic DNA. Translation: AEJ48652.1.
CP002884 Genomic DNA. Translation: AGM02387.1.
RefSeqiYP_005914885.1. NC_017523.1.
YP_008008790.1. NC_021251.1.

Genome annotation databases

EnsemblBacteriaiAEJ48652; AEJ48652; CCDC5079_3463.
AGM02387; AGM02387; CFBS_3955.
GeneIDi12504985.
15618168.
KEGGimte:CCDC5079_3463.
mtur:CFBS_3955.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001641 Genomic DNA. Translation: AEJ48652.1 .
CP002884 Genomic DNA. Translation: AGM02387.1 .
RefSeqi YP_005914885.1. NC_017523.1.
YP_008008790.1. NC_021251.1.

3D structure databases

ProteinModelPortali F7WFJ3.
SMRi F7WFJ3. Positions 6-340.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEJ48652 ; AEJ48652 ; CCDC5079_3463 .
AGM02387 ; AGM02387 ; CFBS_3955 .
GeneIDi 12504985.
15618168.
KEGGi mte:CCDC5079_3463.
mtur:CFBS_3955.

Phylogenomic databases

KOi K01971.
OMAi HERTADC.

Enzyme and pathway databases

BioCyci MTUB443149:GLGT-3507-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequences of Mycobacterium tuberculosis strains CCDC5079 and CCDC5080, which belong to the Beijing family."
    Zhang Y., Chen C., Liu J., Deng H., Pan A., Zhang L., Zhao X., Huang M., Lu B., Dong H., Du P., Chen W., Wan K.
    J. Bacteriol. 193:5591-5592(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CCDC5079Imported.
  2. "ContigScape: a Cytoscape plugin facilitating microbial genome gap closing."
    Tang B., Wang Q., Yang M., Xie F., Zhu Y., Zhuo Y., Wang S., Gao H., Ding X., Zhang L., Zhao G., Zheng H.
    BMC Genomics 14:289-289(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CCDC5079Imported.

Entry informationi

Entry nameiF7WFJ3_MYCTC
AccessioniPrimary (citable) accession number: F7WFJ3
Entry historyi
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: October 1, 2014
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3