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Protein
Submitted name:

WGS project CABT00000000 data, contig 2.36

Gene

SMAC_07013

Organism
Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. serine-tRNA ligase activity Source: InterPro

GO - Biological processi

  1. seryl-tRNA aminoacylation Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
WGS project CABT00000000 data, contig 2.36Imported
Gene namesi
ORF Names:SMAC_07013Imported
OrganismiSordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell)Imported
Taxonomic identifieri771870 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaSordariomycetesSordariomycetidaeSordarialesSordariaceaeSordaria
ProteomesiUP000001881: Unassembled WGS sequence

Subcellular locationi

GO - Cellular componenti

  1. cytoplasm Source: InterPro
Complete GO annotation...

Family & Domainsi

Phylogenomic databases

InParanoidiF7W6U5.
KOiK01875.
OrthoDBiEOG7PVWZM.

Family and domain databases

Gene3Di1.10.287.40. 1 hit.
InterProiIPR002314. aa-tRNA-synt_IIb_cons-dom.
IPR002317. Ser-tRNA-ligase_type_1.
IPR015866. Ser-tRNA-synth_1_N.
IPR010978. tRNA-bd_arm.
[Graphical view]
PANTHERiPTHR11778. PTHR11778. 1 hit.
PfamiPF02403. Seryl_tRNA_N. 1 hit.
PF00587. tRNA-synt_2b. 1 hit.
[Graphical view]
PIRSFiPIRSF001529. Ser-tRNA-synth_IIa. 1 hit.
PRINTSiPR00981. TRNASYNTHSER.
SUPFAMiSSF46589. SSF46589. 1 hit.
TIGRFAMsiTIGR00414. serS. 1 hit.

Sequencei

Sequence statusi: Complete.

F7W6U5-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MLDVNDFSMA PSAHMSLHIL LRQFACVHQA HSLAERGGNP EKIRESQRKR
60 70 80 90 100
FAPVEAVDEV IALWEDHRKT AYSATQLNAK INEVQKQIGP KKKAYTTHIR
110 120 130 140 150
DNCSTTGCSN TTALVKVKTI GNLVHDSVPV SNNEDNNTVE RSWAPEGVSF
160 170 180 190 200
EKKDVLSHHE VLRKLDGYDP ERGVKVVGHR GYFLKKWGVF LNQAIINYGL
210 220 230 240 250
EFLSEREYTP LQTPQLMLRE QMAKTAQLSQ FDEELYKVTG DQADKYLIAT
260 270 280 290 300
SEQPISAFHS DEWLQAKDLP LKYAGYSTCF RKEAGAHGKD VWGIFRVHEF
310 320 330 340 350
TKVEQFCVTE PEKSWEMFDH MISNSEAFYQ SLGIPYRVVA IVSGALNNAA
360 370 380 390 400
AKKLDLEAWF PHQGEFKELV SCSNCTDYQS RDLEIRFGVK KQTDIKKTYV
410 420 430 440 450
HCLNSTLTAT TRTICAILEN FQTPEGVKVP EPLRKYLPGA PEFIPFAPEP
460 470
VKEVKEGKGG KKGEAAPKKE EALPIRQ
Length:477
Mass (Da):53,936
Last modified:September 21, 2011 - v1
Checksum:i422D2F4FB7899E33
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CABT02000036 Genomic DNA. Translation: CCC13235.1.
RefSeqiXP_003349661.1. XM_003349613.1.

Genome annotation databases

GeneIDi10807195.
KEGGismp:SMAC_07013.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CABT02000036 Genomic DNA. Translation: CCC13235.1.
RefSeqiXP_003349661.1. XM_003349613.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi10807195.
KEGGismp:SMAC_07013.

Phylogenomic databases

InParanoidiF7W6U5.
KOiK01875.
OrthoDBiEOG7PVWZM.

Family and domain databases

Gene3Di1.10.287.40. 1 hit.
InterProiIPR002314. aa-tRNA-synt_IIb_cons-dom.
IPR002317. Ser-tRNA-ligase_type_1.
IPR015866. Ser-tRNA-synth_1_N.
IPR010978. tRNA-bd_arm.
[Graphical view]
PANTHERiPTHR11778. PTHR11778. 1 hit.
PfamiPF02403. Seryl_tRNA_N. 1 hit.
PF00587. tRNA-synt_2b. 1 hit.
[Graphical view]
PIRSFiPIRSF001529. Ser-tRNA-synth_IIa. 1 hit.
PRINTSiPR00981. TRNASYNTHSER.
SUPFAMiSSF46589. SSF46589. 1 hit.
TIGRFAMsiTIGR00414. serS. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "De novo assembly of a 40 Mb eukaryotic genome from short sequence reads: Sordaria macrospora, a model organism for fungal morphogenesis."
    Nowrousian M., Stajich J.E., Chu M., Engh I., Espagne E., Halliday K., Kamerewerd J., Kempken F., Knab B., Kuo H.-C., Osiewacz H.D., Poeggeler S., Read N.D., Seiler S., Smith K.M., Zickler D., Kueck U., Freitag M.
    PLoS Genet. 6:E1000891-E1000891(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC MYA-333 / DSM 997 / K(L3346) / K-hellImported.
    Tissue: MyceliumImported.

Entry informationi

Entry nameiF7W6U5_SORMK
AccessioniPrimary (citable) accession number: F7W6U5
Entry historyi
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: January 7, 2015
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.