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F7W6U5 (F7W6U5_SORMK) Unreviewed, UniProtKB/TrEMBL

Last modified March 6, 2013. Version 11. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
WGS project CABT00000000 data, contig 2.36 EMBL CCC13235.1
Gene names
ORF Names:SMAC_07013 EMBL CCC13235.1
OrganismSordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) [Complete proteome] EMBL CCC13235.1
Taxonomic identifier771870 [NCBI]
Taxonomic lineageEukaryota › Fungi › Dikarya › Ascomycota › Pezizomycotina › Sordariomycetes › Sordariomycetidae › Sordariales › Sordariaceae › Sordaria ›

Protein attributes

Sequence length477 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the class-II aminoacyl-tRNA synthetase family. RuleBase RU003746

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data. EMBL CCC13235.1

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processseryl-tRNA aminoacylation

Inferred from electronic annotation. Source: InterPro

   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

serine-tRNA ligase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
F7W6U5 [UniParc].

Last modified September 21, 2011. Version 1.
Checksum: 422D2F4FB7899E33

FASTA47753,936
        10         20         30         40         50         60 
MLDVNDFSMA PSAHMSLHIL LRQFACVHQA HSLAERGGNP EKIRESQRKR FAPVEAVDEV 

        70         80         90        100        110        120 
IALWEDHRKT AYSATQLNAK INEVQKQIGP KKKAYTTHIR DNCSTTGCSN TTALVKVKTI 

       130        140        150        160        170        180 
GNLVHDSVPV SNNEDNNTVE RSWAPEGVSF EKKDVLSHHE VLRKLDGYDP ERGVKVVGHR 

       190        200        210        220        230        240 
GYFLKKWGVF LNQAIINYGL EFLSEREYTP LQTPQLMLRE QMAKTAQLSQ FDEELYKVTG 

       250        260        270        280        290        300 
DQADKYLIAT SEQPISAFHS DEWLQAKDLP LKYAGYSTCF RKEAGAHGKD VWGIFRVHEF 

       310        320        330        340        350        360 
TKVEQFCVTE PEKSWEMFDH MISNSEAFYQ SLGIPYRVVA IVSGALNNAA AKKLDLEAWF 

       370        380        390        400        410        420 
PHQGEFKELV SCSNCTDYQS RDLEIRFGVK KQTDIKKTYV HCLNSTLTAT TRTICAILEN 

       430        440        450        460        470 
FQTPEGVKVP EPLRKYLPGA PEFIPFAPEP VKEVKEGKGG KKGEAAPKKE EALPIRQ

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References

[1]"De novo assembly of a 40 Mb eukaryotic genome from short sequence reads: Sordaria macrospora, a model organism for fungal morphogenesis."
Nowrousian M., Stajich J., Chu M., Engh I., Espagne E., Halliday K., Kamerewerd J., Kempken F., Knab B., Kuo H.C., Osiewacz H.D., Poeggeler S., Read N., Seiler S., Smith K., Zickler D., Kueck U., Freitag M.
PLoS Genet. 6:e1000891-e1000891(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC MYA-333 / DSM 997 / K(L3346) / K-hell.
Tissue: Mycelium EMBL CCC13235.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CABT02000036 Genomic DNA. Translation: CCC13235.1.
RefSeqXP_003349661.1. XM_003349613.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID10807195.
KEGGsmp:SMAC_07013.

Phylogenomic databases

KOK01875.

Family and domain databases

Gene3D1.10.287.40. 1 hit.
InterProIPR002314. aa-tRNA-synt_IIb_cons-dom.
IPR006195. aa-tRNA-synth_II.
IPR002317. Ser-tRNA-ligase_type_1.
IPR015866. Ser-tRNA-synth_1_N.
IPR010978. tRNA-bd_arm.
[Graphical view]
PANTHERPTHR11778. PTHR11778. 1 hit.
PfamPF02403. Seryl_tRNA_N. 1 hit.
PF00587. tRNA-synt_2b. 1 hit.
[Graphical view]
PIRSFPIRSF001529. Ser-tRNA-synth_IIa. 1 hit.
PRINTSPR00981. TRNASYNTHSER.
SUPFAMSSF46589. tRNA_binding_arm. 1 hit.
TIGRFAMsTIGR00414. serS. 1 hit.
PROSITEPS50862. AA_TRNA_LIGASE_II. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF7W6U5_SORMK
AccessionPrimary (citable) accession number: F7W6U5
Entry history
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: March 6, 2013
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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