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Protein
Submitted name:

WGS project CABT00000000 data, contig 2.35

Gene

SMAC_06408

Organism
Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotation

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
WGS project CABT00000000 data, contig 2.35Imported
Gene namesi
ORF Names:SMAC_06408Imported
OrganismiSordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell)Imported
Taxonomic identifieri771870 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaSordariomycetesSordariomycetidaeSordarialesSordariaceaeSordaria
ProteomesiUP000001881 Componenti: Unassembled WGS sequence

Organism-specific databases

EuPathDBiFungiDB:SMAC_06408.

Interactioni

Protein-protein interaction databases

STRINGi771870.XP_003344753.1.

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

InParanoidiF7W6Q0.
KOiK01580.
OrthoDBiEOG7380F0.

Family and domain databases

Gene3Di3.40.640.10. 2 hits.
3.90.1150.10. 1 hit.
InterProiIPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 2 hits.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 2 hits.

Sequencei

Sequence statusi: Complete.

F7W6Q0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNGTHSTDKS ALNRAGEVDR LIDAVKSLIV PFIRDADNAA SFRATGQLPP
60 70 80 90 100
DNRNVLVESL RPEQLVKQLA LSLPQGEGAG QDGLLQTIQS ILSHSVNTWD
110 120 130 140 150
QGFMDKLYAS TNAVGVVTEL LLSVLNTNLH VYQVSPALTV IEKHTAKQFA
160 170 180 190 200
SLFGFTGPRA GGVTCQGGSA SNLTSIVVAR NTLFPLSKLH GNNHTECGAP
210 220 230 240 250
GPLILLTSAH GHYSVEKAAV TCGFGSSSVW TVPVDAQGRM CPSALRETVL
260 270 280 290 300
RAKQEGKHPF YVNATAGTTV MGSYDPLDEI ADLCDEFGMW MHIDGSWGGP
310 320 330 340 350
AIFSEKHRHK MQGSHRARSL TVNPHKMLNV PVTCSFLLTD DVKVFHKANT
360 370 380 390 400
LPAGYLFHGP AAAAGDDEGI DEEKKTTAEE EVLINGNGCG NGNGPKEVWD
410 420 430 440 450
LADLTLQCGR RGDALKLALS WIYYGAAGFE RQIDGAFEMA AYLADLISQR
460 470 480 490 500
KDFVLVSSNP PPCLQVCFYY APGGKLAEDP EENTRRTSKM VEKLIARGFM
510 520 530 540
VDYAPGERGS FFRVVVNCQT LRGTVEGLVK GLEAVGREVV VVPPAI
Length:546
Mass (Da):58,765
Last modified:September 21, 2011 - v1
Checksum:i26DB0B7852983802
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CABT02000035 Genomic DNA. Translation: CCC13189.1.
RefSeqiXP_003344753.1. XM_003344705.1.

Genome annotation databases

GeneIDi10802102.
KEGGismp:SMAC_06408.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CABT02000035 Genomic DNA. Translation: CCC13189.1.
RefSeqiXP_003344753.1. XM_003344705.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi771870.XP_003344753.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi10802102.
KEGGismp:SMAC_06408.

Organism-specific databases

EuPathDBiFungiDB:SMAC_06408.

Phylogenomic databases

InParanoidiF7W6Q0.
KOiK01580.
OrthoDBiEOG7380F0.

Family and domain databases

Gene3Di3.40.640.10. 2 hits.
3.90.1150.10. 1 hit.
InterProiIPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 2 hits.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 2 hits.
ProtoNetiSearch...

Publicationsi

  1. "De novo assembly of a 40 Mb eukaryotic genome from short sequence reads: Sordaria macrospora, a model organism for fungal morphogenesis."
    Nowrousian M., Stajich J.E., Chu M., Engh I., Espagne E., Halliday K., Kamerewerd J., Kempken F., Knab B., Kuo H.-C., Osiewacz H.D., Poeggeler S., Read N.D., Seiler S., Smith K.M., Zickler D., Kueck U., Freitag M.
    PLoS Genet. 6:E1000891-E1000891(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC MYA-333 / DSM 997 / K(L3346) / K-hellImported.
    Tissue: MyceliumImported.

Entry informationi

Entry nameiF7W6Q0_SORMK
AccessioniPrimary (citable) accession number: F7W6Q0
Entry historyi
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: June 24, 2015
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.