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F7W4X1 (F7W4X1_SORMK) Unreviewed, UniProtKB/TrEMBL

Last modified March 6, 2013. Version 11. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
WGS project CABT00000000 data, contig 2.29 EMBL CCC12558.1
Gene names
ORF Names:SMAC_06966 EMBL CCC12558.1
OrganismSordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) [Complete proteome] EMBL CCC12558.1
Taxonomic identifier771870 [NCBI]
Taxonomic lineageEukaryota › Fungi › Dikarya › Ascomycota › Pezizomycotina › Sordariomycetes › Sordariomycetidae › Sordariales › Sordariaceae › Sordaria ›

Protein attributes

Sequence length564 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Sequence similarities

Contains 1 F-box domain. RuleBase RU004534

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data. EMBL CCC12558.1

Ontologies

Keywords
   DomainRepeat RuleBase RU003532
WD repeat RuleBase RU000362
   Technical termComplete proteome
Gene Ontology (GO)
None. [Check GOA]

Sequences

Sequence LengthMass (Da)Tools
F7W4X1 [UniParc].

Last modified September 21, 2011. Version 1.
Checksum: 2EB25841EA42F2DC

FASTA56463,383
        10         20         30         40         50         60 
MPTQLKSWMI YQLLRRCPRK TLQAVADVVN PALKCDFFRR LPTELSLHIL SYLDHRDLCR 

        70         80         90        100        110        120 
AAQVSKQWRN IIDSNETGWK ELFDRDGFQL APGELQKAIA QGWGWQDPVG ALEGEVDLSQ 

       130        140        150        160        170        180 
HSRLTSSESE LFKSAAKSEK SDKADSSPTP KIRSSKRKRN AGHSNTERSK RRVSFQDLRE 

       190        200        210        220        230        240 
SFHQTHRSEG PISTRTKSST GSDDTLIHVY DTKTGKLRTK LEGHEGGVWA LQYVGNTLVS 

       250        260        270        280        290        300 
GSTDRSVRVW DIQKGICTQT FYGHTSTVRC LQILMPTETG EVKNGEPVMM PEKPLIITGS 

       310        320        330        340        350        360 
RDSQLRVWRL PEPGSRRYIM NGPAANEENC PYFVRILQGH AHSVRSISAH GDILVSGSYD 

       370        380        390        400        410        420 
STVRVWRIST GQQLHVLSGH NQKVYSVVLD HKRNRCISGS MDSYVKIWDL DTGACLYTLE 

       430        440        450        460        470        480 
GHSLLVGLLD LRDEKLVSAA ADSTLRIWDP ENGKCKHTLM AHTGAITCFQ HDGRKVISGS 

       490        500        510        520        530        540 
EKTVKMWDVQ TGECMQDLLT DLSGVWQVKF DERRCVAAVQ RGNLTYVEIL DFGAVRDGAP 

       550        560 
PEELGKRKLL NEAEVQQLLL TEGE

« Hide

References

[1]"De novo assembly of a 40 Mb eukaryotic genome from short sequence reads: Sordaria macrospora, a model organism for fungal morphogenesis."
Nowrousian M., Stajich J., Chu M., Engh I., Espagne E., Halliday K., Kamerewerd J., Kempken F., Knab B., Kuo H.C., Osiewacz H.D., Poeggeler S., Read N., Seiler S., Smith K., Zickler D., Kueck U., Freitag M.
PLoS Genet. 6:e1000891-e1000891(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC MYA-333 / DSM 997 / K(L3346) / K-hell.
Tissue: Mycelium EMBL CCC12558.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CABT02000029 Genomic DNA. Translation: CCC12558.1.
RefSeqXP_003349129.1. XM_003349081.1.

3D structure databases

ProteinModelPortalF7W4X1.
ModBaseSearch...

Proteomic databases

PRIDEF7W4X1.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID10806592.
KEGGsmp:SMAC_06966.

Phylogenomic databases

KOK03361.

Family and domain databases

Gene3D2.130.10.10. 2 hits.
InterProIPR001810. F-box_dom_cyclin-like.
IPR020472. G-protein_beta_WD-40_rep.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamPF00400. WD40. 6 hits.
[Graphical view]
PRINTSPR00320. GPROTEINBRPT.
SMARTSM00256. FBOX. 1 hit.
SM00320. WD40. 6 hits.
[Graphical view]
SUPFAMSSF81383. F-box_dom_Skp2-like. 1 hit.
SSF50978. WD40_like. 1 hit.
PROSITEPS50181. FBOX. 1 hit.
PS00678. WD_REPEATS_1. 2 hits.
PS50082. WD_REPEATS_2. 5 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF7W4X1_SORMK
AccessionPrimary (citable) accession number: F7W4X1
Entry history
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: March 6, 2013
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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