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F7VQK9 (F7VQK9_SORMK) Unreviewed, UniProtKB/TrEMBL

Last modified March 6, 2013. Version 10. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
WGS project CABT00000000 data, contig 2.4 EMBL CCC07791.1
Gene names
ORF Names:SMAC_01357 EMBL CCC07791.1
OrganismSordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) [Complete proteome] EMBL CCC07791.1
Taxonomic identifier771870 [NCBI]
Taxonomic lineageEukaryota › Fungi › Dikarya › Ascomycota › Pezizomycotina › Sordariomycetes › Sordariomycetidae › Sordariales › Sordariaceae › Sordaria ›

Protein attributes

Sequence length619 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data. EMBL CCC07791.1

Ontologies

Keywords
   LigandPyridoxal phosphate RuleBase RU000382
   Molecular functionLyase RuleBase RU000382
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processglutamate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functionglutamate decarboxylase activity

Inferred from electronic annotation. Source: InterPro

pyridoxal phosphate binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
F7VQK9 [UniParc].

Last modified September 21, 2011. Version 1.
Checksum: 3BB79385A5176049

FASTA61969,672
        10         20         30         40         50         60 
MSLSHHVDPE EIVHHLRDIK LQEKGSSSQK QNHLTPYTSS YASQEDIPKY KIPEDGTPGD 

        70         80         90        100        110        120 
TVYAMLRDEL DLDGRPNLNM ASFVNTYIEE NAQKLFVENL GKNMSDNDEY PAMISFSDRC 

       130        140        150        160        170        180 
VSILAHLWGV QKGEKAIGTA TVGSSEAVHL GGLAMKRRWQ EKRWAEGKDA YKPNIIMGAN 

       190        200        210        220        230        240 
AQVALEKFAR YFDVEARILP VSAKSNYCLD PELVKENLDE NTIGVFIILG STYTGHYEPV 

       250        260        270        280        290        300 
EEIHKILDDF EAKTGIDIPI HVDAASGGFV APFTYAKTGG QKWNFELPRV KSINVSGHKY 

       310        320        330        340        350        360 
GLVTPGVGWI VWRDESFLPK HLIFELHYLG GTEYSYTLNF SRPGAQVIVQ YYNLIHLGFK 

       370        380        390        400        410        420 
GYREVVENCL SNARLLSKAL EATGWYTCAS DIHRPPKKQA SGTAGLSGAD DSKKNDQSSG 

       430        440        450        460        470        480 
NENNDQKAEK EESKTHASDS KDASKDKDRE ETSADYTPGL PVVSFRFTDE FKKEYPHVKQ 

       490        500        510        520        530        540 
ETVSLLMRAR QWIIPNYALP PNEDQTEILR VVIRESFSFD LIDRLVTDLV SVTETLMEND 

       550        560        570        580        590        600 
EVDLSVLQGN QGGRRKPVTK QDKKKQKEEK EKEEKKGEEK GEKKGEEKGE KKGEEKGKAE 

       610 
EKKKEEKKRL GGGIHRSVC

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References

[1]"De novo assembly of a 40 Mb eukaryotic genome from short sequence reads: Sordaria macrospora, a model organism for fungal morphogenesis."
Nowrousian M., Stajich J., Chu M., Engh I., Espagne E., Halliday K., Kamerewerd J., Kempken F., Knab B., Kuo H.C., Osiewacz H.D., Poeggeler S., Read N., Seiler S., Smith K., Zickler D., Kueck U., Freitag M.
PLoS Genet. 6:e1000891-e1000891(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC MYA-333 / DSM 997 / K(L3346) / K-hell.
Tissue: Mycelium EMBL CCC07791.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CABT02000004 Genomic DNA. Translation: CCC07791.1.
RefSeqXP_003352523.1. XM_003352475.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID10810150.
KEGGsmp:SMAC_01357.

Phylogenomic databases

KOK01580.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
InterProIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERPTHR11999:SF1. PTHR11999:SF1. 1 hit.
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMsTIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameF7VQK9_SORMK
AccessionPrimary (citable) accession number: F7VQK9
Entry history
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: March 6, 2013
This is version 10 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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