Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

50S ribosomal protein L20

Gene

rplT

Organism
Synechocystis sp. (strain PCC 6803 / GT-S)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.UniRule annotation

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. ribosomal large subunit assembly Source: UniProtKB-HAMAP
  2. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal proteinUniRule annotation

Keywords - Ligandi

RNA-binding, rRNA-bindingUniRule annotation

Enzyme and pathway databases

BioCyciSSP1148:GJOT-2188-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L20UniRule annotation
Gene namesi
Name:rplTUniRule annotationImported
Synonyms:rpl20UniRule annotation
Ordered Locus Names:SYNGTS_2157Imported
OrganismiSynechocystis sp. (strain PCC 6803 / GT-S)Imported
Taxonomic identifieri1111707 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
ProteomesiUP000008187 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

Structurei

3D structure databases

ProteinModelPortaliF7URZ3.
SMRiF7URZ3. Positions 3-116.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L20P family.UniRule annotation

Phylogenomic databases

KOiK02887.

Family and domain databases

HAMAPiMF_00382. Ribosomal_L20.
InterProiIPR005813. Ribosomal_L20.
[Graphical view]
PANTHERiPTHR10986. PTHR10986. 1 hit.
PfamiPF00453. Ribosomal_L20. 1 hit.
[Graphical view]
PRINTSiPR00062. RIBOSOMALL20.
TIGRFAMsiTIGR01032. rplT_bact. 1 hit.
PROSITEiPS00937. RIBOSOMAL_L20. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F7URZ3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTRVKRGNVA RKRRKKILKL AKGFRGSHSK LFRTANQQVM KALRNAYRDR
60 70 80 90 100
RKRKRDFRRL WITRINAAAR QEGMSYSKLT GQLKKANIEI NRKMLAQLAV
110
LDPAAFSEVV KVAATAK
Length:117
Mass (Da):13,553
Last modified:September 21, 2011 - v1
Checksum:i76664A15C1605292
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP012205 Genomic DNA. Translation: BAK50905.1.
RefSeqiNP_442051.1. NC_000911.1.
YP_005652110.1. NC_017277.1.
YP_007451930.1. NC_020286.1.

Genome annotation databases

EnsemblBacteriaiBAK50905; BAK50905; SYNGTS_2157.
KEGGisyn:sll0767.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP012205 Genomic DNA. Translation: BAK50905.1.
RefSeqiNP_442051.1. NC_000911.1.
YP_005652110.1. NC_017277.1.
YP_007451930.1. NC_020286.1.

3D structure databases

ProteinModelPortaliF7URZ3.
SMRiF7URZ3. Positions 3-116.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAK50905; BAK50905; SYNGTS_2157.
KEGGisyn:sll0767.

Phylogenomic databases

KOiK02887.

Enzyme and pathway databases

BioCyciSSP1148:GJOT-2188-MONOMER.

Family and domain databases

HAMAPiMF_00382. Ribosomal_L20.
InterProiIPR005813. Ribosomal_L20.
[Graphical view]
PANTHERiPTHR10986. PTHR10986. 1 hit.
PfamiPF00453. Ribosomal_L20. 1 hit.
[Graphical view]
PRINTSiPR00062. RIBOSOMALL20.
TIGRFAMsiTIGR01032. rplT_bact. 1 hit.
PROSITEiPS00937. RIBOSOMAL_L20. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genomic structure of the cyanobacterium Synechocystis sp. PCC 6803 strain GT-S."
    Tajima N., Sato S., Maruyama F., Kaneko T., Sasaki N.V., Kurokawa K., Ohta H., Kanesaki Y., Yoshikawa H., Tabata S., Ikeuchi M., Sato N.
    DNA Res. 18:393-399(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PCC 6803 / GT-SImported.

Entry informationi

Entry nameiF7URZ3_SYNYG
AccessioniPrimary (citable) accession number: F7URZ3
Entry historyi
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: April 1, 2015
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.