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F7UPM0 (F7UPM0_SYNYG) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 20. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Aspartate--tRNA ligase HAMAP-Rule MF_00044
EC=6.1.1.12 HAMAP-Rule MF_00044
Alternative name(s):
Aspartyl-tRNA synthetase HAMAP-Rule MF_00044
Gene names
Name:aspS HAMAP-Rule MF_00044
Ordered Locus Names:SYNGTS_1334 EMBL BAK50082.1
OrganismSynechocystis sp. (strain PCC 6803 / GT-S) [Complete proteome] [HAMAP]
Taxonomic identifier1111707 [NCBI]
Taxonomic lineageBacteria › Cyanobacteria › Oscillatoriophycideae › Chroococcales › Synechocystis ›

Protein attributes

Sequence length599 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + L-aspartate + tRNA(Asp) = AMP + diphosphate + L-aspartyl-tRNA(Asp). HAMAP-Rule MF_00044 SAAS SAAS004524

Subunit structure

Homodimer By similarity. HAMAP-Rule MF_00044 SAAS SAAS004524

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00044 SAAS SAAS004524.

Sequence similarities

Belongs to the class-II aminoacyl-tRNA synthetase family. RuleBase RU003746 HAMAP-Rule MF_00044

Sequences

Sequence LengthMass (Da)Tools
F7UPM0 [UniParc].

Last modified September 21, 2011. Version 1.
Checksum: 2B89C952C82A5246

FASTA59967,209
        10         20         30         40         50         60 
MRTHYCGDLR TTHLGETVTL YGWVDRRRDH GGVIFLDLRD RQGIVQIASS PDQTPASYPV 

        70         80         90        100        110        120 
AEGLRNEYVV QVTGVVSKRP PESLNEKIPT GEIEIYADSI ILLNGVNQQL PFVVSSHEAE 

       130        140        150        160        170        180 
QVREDVRLKY RYLDLRRARL SQNLQLRHQV VKAMRRFLED QENFLEIETP ILTRSTPEGA 

       190        200        210        220        230        240 
RDYLVPSRVN PGEWYALPQS PQLFKQLLMV AGMDRYYQIA RCFRDEDLRA DRQPEFTQLD 

       250        260        270        280        290        300 
MEMSFMGQEE ILDLNEALIC HIFKVVKNID LPRPFPRLTY QESMAKYGND RPDTRFGLEL 

       310        320        330        340        350        360 
VDVSDLLGNT GFKVFSAAVS SGGSIKAIRV PGGNETISNV RIKPGGDLFK EATEAGAKGI 

       370        380        390        400        410        420 
AYIRVRDNGE IDTIGAIKEN LDEAQVKTLL QLTQAEAGDL LLFGAGDTAT VDKSLSRLRL 

       430        440        450        460        470        480 
VLGEQLGLID PDAINLLWIT DFPMFEWNSD EKRFEALHHP FTAPHPDDLG DLKTARAQAY 

       490        500        510        520        530        540 
DLVMNGVEIG GGSLRIYQRE VQEKVFATIG LSPEEAHEKF GFLLDAFEYG TPPHGGIAYG 

       550        560        570        580        590 
LDRLVMLLAK EDSIRDVIAF PKTQQASCLL TEAPAAVDKK QLKELSVAST YVPKVKVDD

« Hide

References

[1]"Genomic structure of the cyanobacterium Synechocystis sp. PCC 6803 strain GT-S."
Tajima N., Sato S., Maruyama F., Kaneko T., Sasaki N.V., Kurokawa K., Ohta H., Kanesaki Y., Yoshikawa H., Tabata S., Ikeuchi M., Sato N.
DNA Res. 18:393-399(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: PCC 6803 / GT-S.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AP012205 Genomic DNA. Translation: BAK50082.1.
RefSeqNP_441230.1. NC_000911.1.
YP_005651287.1. NC_017277.1.
YP_007451112.1. NC_020286.1.

3D structure databases

ProteinModelPortalF7UPM0.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAK50082; BAK50082; SYNGTS_1334.
GeneID12255695.
14616768.
954572.
KEGGsyn:slr1720.
syy:SYNGTS_1334.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01876.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
3.30.1360.30. 1 hit.
HAMAPMF_00044_B. Asp_tRNA_synth_B.
InterProIPR004364. aa-tRNA-synt_II.
IPR018150. aa-tRNA-synt_II-like.
IPR006195. aa-tRNA-synth_II.
IPR004524. Asp-tRNA-ligase_IIb_bac/mt.
IPR002312. Asp/Asn-tRNA-synth_IIb.
IPR004115. GAD_dom.
IPR012340. NA-bd_OB-fold.
IPR004365. NA-bd_OB_tRNA-helicase.
[Graphical view]
PANTHERPTHR22594. PTHR22594. 1 hit.
PTHR22594:SF5. PTHR22594:SF5. 1 hit.
PfamPF02938. GAD. 1 hit.
PF00152. tRNA-synt_2. 1 hit.
PF01336. tRNA_anti. 1 hit.
[Graphical view]
PRINTSPR01042. TRNASYNTHASP.
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
SSF55261. SSF55261. 1 hit.
TIGRFAMsTIGR00459. aspS_bact. 1 hit.
PROSITEPS50862. AA_TRNA_LIGASE_II. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF7UPM0_SYNYG
AccessionPrimary (citable) accession number: F7UPM0
Entry history
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: May 1, 2013
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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