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F7EMD8

- F7EMD8_MONDO

UniProt

F7EMD8 - F7EMD8_MONDO

Protein
Submitted name:

Uncharacterized protein

Gene

SGCB

Organism
Monodelphis domestica (Gray short-tailed opossum)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 20 (01 Oct 2014)
      Sequence version 2 (09 Jan 2013)
      Previous versions | rss
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    Functioni

    GO - Biological processi

    1. cardiocyte differentiation Source: Ensembl
    2. muscle organ development Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Uncharacterized proteinImported
    Gene namesi
    Name:SGCBImported
    OrganismiMonodelphis domestica (Gray short-tailed opossum)Imported
    Taxonomic identifieri13616 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaMetatheriaDidelphimorphiaDidelphidaeMonodelphis
    ProteomesiUP000002280: Chromosome 5

    Subcellular locationi

    GO - Cellular componenti

    1. integral component of membrane Source: InterPro
    2. sarcoglycan complex Source: InterPro

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00390000008110.
    KOiK12566.
    OMAiNMGCQTS.
    OrthoDBiEOG74R1R4.
    TreeFamiTF313538.

    Family and domain databases

    InterProiIPR006875. Sarcoglycan.
    IPR027659. Sgcb.
    [Graphical view]
    PANTHERiPTHR21142. PTHR21142. 1 hit.
    PfamiPF04790. Sarcoglycan_1. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F7EMD8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MATAAAGAAA EQQSSNGPVK KSMREKAVER RNVNKEHNSN FKAGYIPIDE    50
    DRLHKTGLRG RKGNLAICVI VLLFILAVIN LIITLVIWAV IRIGPNGCDS 100
    MEFHESGLLR FKQVSDMGVI HPLYKSTVGG RRNENLVITG NNQPIVFQQG 150
    TTKLSVEKNK TSITSDIGMQ FFDPRTQNIL FSTDYETHEF HLPSGVKSLN 200
    VQKASTERIT SNATSDLNIK VDGRAIVRGN EGVFIMGKTI EFHVGGNMEL 250
    KAEHSIILNG SVMVSTSRLP SSSFGDQLNN GDWVRYKLCM CADGTLFKVQ 300
    VTGQNMGCQI SDNPCGNTH 319
    Length:319
    Mass (Da):34,982
    Last modified:January 9, 2013 - v2
    Checksum:i62A87290F6294C6B
    GO

    Sequence databases

    RefSeqiXP_001371692.1. XM_001371655.2.

    Genome annotation databases

    EnsembliENSMODT00000026287; ENSMODP00000025826; ENSMODG00000020644.
    GeneIDi100018476.
    KEGGimdo:100018476.

    Cross-referencesi

    Sequence databases

    RefSeqi XP_001371692.1. XM_001371655.2.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMODT00000026287 ; ENSMODP00000025826 ; ENSMODG00000020644 .
    GeneIDi 100018476.
    KEGGi mdo:100018476.

    Organism-specific databases

    CTDi 6443.

    Phylogenomic databases

    GeneTreei ENSGT00390000008110.
    KOi K12566.
    OMAi NMGCQTS.
    OrthoDBi EOG74R1R4.
    TreeFami TF313538.

    Family and domain databases

    InterProi IPR006875. Sarcoglycan.
    IPR027659. Sgcb.
    [Graphical view ]
    PANTHERi PTHR21142. PTHR21142. 1 hit.
    Pfami PF04790. Sarcoglycan_1. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences."
      Mikkelsen T.S., Wakefield M.J., Aken B., Amemiya C.T., Chang J.L., Duke S., Garber M., Gentles A.J., Goodstadt L., Heger A., Jurka J., Kamal M., Mauceli E., Searle S.M., Sharpe T., Baker M.L., Batzer M.A., Benos P.V.
      , Belov K., Clamp M., Cook A., Cuff J., Das R., Davidow L., Deakin J.E., Fazzari M.J., Glass J.L., Grabherr M., Greally J.M., Gu W., Hore T.A., Huttley G.A., Kleber M., Jirtle R.L., Koina E., Lee J.T., Mahony S., Marra M.A., Miller R.D., Nicholls R.D., Oda M., Papenfuss A.T., Parra Z.E., Pollock D.D., Ray D.A., Schein J.E., Speed T.P., Thompson K., VandeBerg J.L., Wade C.M., Walker J.A., Waters P.D., Webber C., Weidman J.R., Xie X., Zody M.C., Baldwin J., Abdouelleil A., Abdulkadir J., Abebe A., Abera B., Abreu J., Acer S.C., Aftuck L., Alexander A., An P., Anderson E., Anderson S., Arachi H., Azer M., Bachantsang P., Barry A., Bayul T., Berlin A., Bessette D., Bloom T., Bloom T., Boguslavskiy L., Bonnet C., Boukhgalter B., Bourzgui I., Brown A., Cahill P., Channer S., Cheshatsang Y., Chuda L., Citroen M., Collymore A., Cooke P., Costello M., D'Aco K., Daza R., De Haan G., DeGray S., DeMaso C., Dhargay N., Dooley K., Dooley E., Doricent M., Dorje P., Dorjee K., Dupes A., Elong R., Falk J., Farina A., Faro S., Ferguson D., Fisher S., Foley C.D., Franke A., Friedrich D., Gadbois L., Gearin G., Gearin C.R., Giannoukos G., Goode T., Graham J., Grandbois E., Grewal S., Gyaltsen K., Hafez N., Hagos B., Hall J., Henson C., Hollinger A., Honan T., Huard M.D., Hughes L., Hurhula B., Husby M.E., Kamat A., Kanga B., Kashin S., Khazanovich D., Kisner P., Lance K., Lara M., Lee W., Lennon N., Letendre F., LeVine R., Lipovsky A., Liu X., Liu J., Liu S., Lokyitsang T., Lokyitsang Y., Lubonja R., Lui A., MacDonald P., Magnisalis V., Maru K., Matthews C., McCusker W., McDonough S., Mehta T., Meldrim J., Meneus L., Mihai O., Mihalev A., Mihova T., Mittelman R., Mlenga V., Montmayeur A., Mulrain L., Navidi A., Naylor J., Negash T., Nguyen T., Nguyen N., Nicol R., Norbu C., Norbu N., Novod N., O'Neill B., Osman S., Markiewicz E., Oyono O.L., Patti C., Phunkhang P., Pierre F., Priest M., Raghuraman S., Rege F., Reyes R., Rise C., Rogov P., Ross K., Ryan E., Settipalli S., Shea T., Sherpa N., Shi L., Shih D., Sparrow T., Spaulding J., Stalker J., Stange-Thomann N., Stavropoulos S., Stone C., Strader C., Tesfaye S., Thomson T., Thoulutsang Y., Thoulutsang D., Topham K., Topping I., Tsamla T., Vassiliev H., Vo A., Wangchuk T., Wangdi T., Weiand M., Wilkinson J., Wilson A., Yadav S., Young G., Yu Q., Zembek L., Zhong D., Zimmer A., Zwirko Z., Jaffe D.B., Alvarez P., Brockman W., Butler J., Chin C., Gnerre S., MacCallum I., Graves J.A., Ponting C.P., Breen M., Samollow P.B., Lander E.S., Lindblad-Toh K.
      Nature 447:167-177(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    2. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.

    Entry informationi

    Entry nameiF7EMD8_MONDO
    AccessioniPrimary (citable) accession number: F7EMD8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 27, 2011
    Last sequence update: January 9, 2013
    Last modified: October 1, 2014
    This is version 20 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3