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Protein
Submitted name:

Uncharacterized protein

Gene

SGCB

Organism
Monodelphis domestica (Gray short-tailed opossum)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Biological processi

  1. cardiac muscle cell development Source: Ensembl
  2. muscle fiber development Source: Ensembl
  3. muscle organ development Source: InterPro
  4. vascular smooth muscle cell development Source: Ensembl
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:SGCBImported
OrganismiMonodelphis domestica (Gray short-tailed opossum)Imported
Taxonomic identifieri13616 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaMetatheriaDidelphimorphiaDidelphidaeMonodelphis
ProteomesiUP000002280 Componenti: Chromosome 5

Subcellular locationi

GO - Cellular componenti

  1. integral component of membrane Source: InterPro
  2. sarcoglycan complex Source: InterPro
  3. sarcolemma Source: Ensembl
Complete GO annotation...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00390000008110.
InParanoidiF7EMD8.
KOiK12566.
OMAiNMGCQTS.
OrthoDBiEOG74R1R4.
TreeFamiTF313538.

Family and domain databases

InterProiIPR006875. Sarcoglycan.
IPR027659. Sgcb.
[Graphical view]
PANTHERiPTHR21142. PTHR21142. 1 hit.
PfamiPF04790. Sarcoglycan_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F7EMD8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATAAAGAAA EQQSSNGPVK KSMREKAVER RNVNKEHNSN FKAGYIPIDE
60 70 80 90 100
DRLHKTGLRG RKGNLAICVI VLLFILAVIN LIITLVIWAV IRIGPNGCDS
110 120 130 140 150
MEFHESGLLR FKQVSDMGVI HPLYKSTVGG RRNENLVITG NNQPIVFQQG
160 170 180 190 200
TTKLSVEKNK TSITSDIGMQ FFDPRTQNIL FSTDYETHEF HLPSGVKSLN
210 220 230 240 250
VQKASTERIT SNATSDLNIK VDGRAIVRGN EGVFIMGKTI EFHVGGNMEL
260 270 280 290 300
KAEHSIILNG SVMVSTSRLP SSSFGDQLNN GDWVRYKLCM CADGTLFKVQ
310
VTGQNMGCQI SDNPCGNTH
Length:319
Mass (Da):34,982
Last modified:January 8, 2013 - v2
Checksum:i62A87290F6294C6B
GO

Sequence databases

RefSeqiXP_001371692.1. XM_001371655.2.

Genome annotation databases

EnsembliENSMODT00000026287; ENSMODP00000025826; ENSMODG00000020644.
GeneIDi100018476.
KEGGimdo:100018476.

Cross-referencesi

Sequence databases

RefSeqiXP_001371692.1. XM_001371655.2.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMODT00000026287; ENSMODP00000025826; ENSMODG00000020644.
GeneIDi100018476.
KEGGimdo:100018476.

Organism-specific databases

CTDi6443.

Phylogenomic databases

GeneTreeiENSGT00390000008110.
InParanoidiF7EMD8.
KOiK12566.
OMAiNMGCQTS.
OrthoDBiEOG74R1R4.
TreeFamiTF313538.

Family and domain databases

InterProiIPR006875. Sarcoglycan.
IPR027659. Sgcb.
[Graphical view]
PANTHERiPTHR21142. PTHR21142. 1 hit.
PfamiPF04790. Sarcoglycan_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences."
    Mikkelsen T.S., Wakefield M.J., Aken B., Amemiya C.T., Chang J.L., Duke S., Garber M., Gentles A.J., Goodstadt L., Heger A., Jurka J., Kamal M., Mauceli E., Searle S.M., Sharpe T., Baker M.L., Batzer M.A., Benos P.V.
    , Belov K., Clamp M., Cook A., Cuff J., Das R., Davidow L., Deakin J.E., Fazzari M.J., Glass J.L., Grabherr M., Greally J.M., Gu W., Hore T.A., Huttley G.A., Kleber M., Jirtle R.L., Koina E., Lee J.T., Mahony S., Marra M.A., Miller R.D., Nicholls R.D., Oda M., Papenfuss A.T., Parra Z.E., Pollock D.D., Ray D.A., Schein J.E., Speed T.P., Thompson K., VandeBerg J.L., Wade C.M., Walker J.A., Waters P.D., Webber C., Weidman J.R., Xie X., Zody M.C., Baldwin J., Abdouelleil A., Abdulkadir J., Abebe A., Abera B., Abreu J., Acer S.C., Aftuck L., Alexander A., An P., Anderson E., Anderson S., Arachi H., Azer M., Bachantsang P., Barry A., Bayul T., Berlin A., Bessette D., Bloom T., Bloom T., Boguslavskiy L., Bonnet C., Boukhgalter B., Bourzgui I., Brown A., Cahill P., Channer S., Cheshatsang Y., Chuda L., Citroen M., Collymore A., Cooke P., Costello M., D'Aco K., Daza R., De Haan G., DeGray S., DeMaso C., Dhargay N., Dooley K., Dooley E., Doricent M., Dorje P., Dorjee K., Dupes A., Elong R., Falk J., Farina A., Faro S., Ferguson D., Fisher S., Foley C.D., Franke A., Friedrich D., Gadbois L., Gearin G., Gearin C.R., Giannoukos G., Goode T., Graham J., Grandbois E., Grewal S., Gyaltsen K., Hafez N., Hagos B., Hall J., Henson C., Hollinger A., Honan T., Huard M.D., Hughes L., Hurhula B., Husby M.E., Kamat A., Kanga B., Kashin S., Khazanovich D., Kisner P., Lance K., Lara M., Lee W., Lennon N., Letendre F., LeVine R., Lipovsky A., Liu X., Liu J., Liu S., Lokyitsang T., Lokyitsang Y., Lubonja R., Lui A., MacDonald P., Magnisalis V., Maru K., Matthews C., McCusker W., McDonough S., Mehta T., Meldrim J., Meneus L., Mihai O., Mihalev A., Mihova T., Mittelman R., Mlenga V., Montmayeur A., Mulrain L., Navidi A., Naylor J., Negash T., Nguyen T., Nguyen N., Nicol R., Norbu C., Norbu N., Novod N., O'Neill B., Osman S., Markiewicz E., Oyono O.L., Patti C., Phunkhang P., Pierre F., Priest M., Raghuraman S., Rege F., Reyes R., Rise C., Rogov P., Ross K., Ryan E., Settipalli S., Shea T., Sherpa N., Shi L., Shih D., Sparrow T., Spaulding J., Stalker J., Stange-Thomann N., Stavropoulos S., Stone C., Strader C., Tesfaye S., Thomson T., Thoulutsang Y., Thoulutsang D., Topham K., Topping I., Tsamla T., Vassiliev H., Vo A., Wangchuk T., Wangdi T., Weiand M., Wilkinson J., Wilson A., Yadav S., Young G., Yu Q., Zembek L., Zhong D., Zimmer A., Zwirko Z., Jaffe D.B., Alvarez P., Brockman W., Butler J., Chin C., Gnerre S., MacCallum I., Graves J.A., Ponting C.P., Breen M., Samollow P.B., Lander E.S., Lindblad-Toh K.
    Nature 447:167-177(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. Ensembl
    Submitted (JUN-2011) to UniProtKB
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiF7EMD8_MONDO
AccessioniPrimary (citable) accession number: F7EMD8
Entry historyi
Integrated into UniProtKB/TrEMBL: July 26, 2011
Last sequence update: January 8, 2013
Last modified: January 6, 2015
This is version 22 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.