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Protein
Submitted name:

Short transient receptor potential channel 2

Gene

Trpc2

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. damaged DNA binding Source: InterPro

GO - Biological processi

  1. single strand break repair Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Short transient receptor potential channel 2Imported
Gene namesi
Name:Trpc2Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589 Componenti: Chromosome 7

Organism-specific databases

MGIiMGI:109527. Trpc2.

Subcellular locationi

GO - Cellular componenti

  1. nucleus Source: InterPro
Complete GO annotation...

Expressioni

Gene expression databases

BgeeiF7D6D1.
ExpressionAtlasiF7D6D1. baseline.

Structurei

3D structure databases

ProteinModelPortaliF7D6D1.
SMRiF7D6D1. Positions 1-63.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00760000119180.

Family and domain databases

Gene3Di2.60.120.260. 1 hit.
InterProiIPR008979. Galactose-bd-like.
IPR002706. Xrcc1_N.
[Graphical view]
PfamiPF01834. XRCC1_N. 1 hit.
[Graphical view]
SUPFAMiSSF49785. SSF49785. 1 hit.

Sequencei

Sequence statusi: Fragment.

F7D6D1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
ATMLMSRTDS KSGKNRSGVR MFKDGDFLTP ASGESWDRLR LTCSQPFTRH
60 70 80 90 100
QSFGLAFLRV RSSLGSLADP VVDPSAPGSS GLNQNSTDVL ESDPRPWLTN
110 120 130 140 150
PSIRRTFFPD PQTYVPAVDI SQGQGHIAHG HKNPSRGPLE HQGNFRAQGY
160 170
VEAVAARASG AGSPHGAFCC P
Length:171
Mass (Da):18,393
Last modified:July 27, 2011 - v1
Checksum:i576D945BCD9FA99A
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC132297 Genomic DNA. No translation available.
AC150275 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSMUST00000139104; ENSMUSP00000122430; ENSMUSG00000070425.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC132297 Genomic DNA. No translation available.
AC150275 Genomic DNA. No translation available.

3D structure databases

ProteinModelPortaliF7D6D1.
SMRiF7D6D1. Positions 1-63.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000139104; ENSMUSP00000122430; ENSMUSG00000070425.

Organism-specific databases

MGIiMGI:109527. Trpc2.

Phylogenomic databases

GeneTreeiENSGT00760000119180.

Miscellaneous databases

NextBioi35559623.
SOURCEiSearch...

Gene expression databases

BgeeiF7D6D1.
ExpressionAtlasiF7D6D1. baseline.

Family and domain databases

Gene3Di2.60.120.260. 1 hit.
InterProiIPR008979. Galactose-bd-like.
IPR002706. Xrcc1_N.
[Graphical view]
PfamiPF01834. XRCC1_N. 1 hit.
[Graphical view]
SUPFAMiSSF49785. SSF49785. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  2. Ensembl
    Submitted (JUN-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiF7D6D1_MOUSE
AccessioniPrimary (citable) accession number: F7D6D1
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: February 4, 2015
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.