Skip Header

Contribute Send feedback
Read comments (?) or add your own

F6YVG4 (F6YVG4_MACMU) Unreviewed, UniProtKB/TrEMBL

Last modified March 6, 2013. Version 14. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Protein attributes

Sequence length710 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Binds 1 calcium ion per subunit By similarity. PIRSR PIRSR000459-2

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSMMUP00000029293

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site2791 By similarity PIRSR PIRSR000459-1
Active site3381 By similarity PIRSR PIRSR000459-1
Active site3611 By similarity PIRSR PIRSR000459-1
Metal binding4011Calcium By similarity PIRSR PIRSR000459-2
Metal binding4031Calcium By similarity PIRSR PIRSR000459-2
Metal binding4501Calcium By similarity PIRSR PIRSR000459-2
Metal binding4551Calcium By similarity PIRSR PIRSR000459-2

Sequences

Sequence LengthMass (Da)Tools
F6YVG4 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: 9C017A959916691F

FASTA71079,813
        10         20         30         40         50         60 
MDQVATLQLE SVDLQSSGNN REHHTQEMGV KRLTVRRGQL FYLRLSFSRP FQSQSDHITF 

        70         80         90        100        110        120 
VAETGPKPSE LLGTRATFFL TRVRPGNVWS ASDFTIDSNS LHVSLFTPAN AVIGHYILKI 

       130        140        150        160        170        180 
EISQGQGHSV TYPLGTFILL FNPWSPEDDV YLPSEILLQE YVMQDYGFVY KGHERFITSW 

       190        200        210        220        230        240 
PWNYGQFEED IIDICFEILN KSLHYLKNPA KDCSQRNDVV YVCRVVSAMI NSNDDNGVLQ 

       250        260        270        280        290        300 
GNWSEDYSEG VSPLEWNGSV AILRQWSARG GQPVKYGQCW VFASVMCTVM RCLGVPTRVV 

       310        320        330        340        350        360 
SNFRSAHNVD RNLTIDTYYD RNAEMLSTQK RDKIWNFHVW NECWMIRKDL PPGYNGWQVL 

       370        380        390        400        410        420 
DPTPQQTSSG LFCCGPASVK AIREGDVHLA YDTPFVYAEV NADEVIWLLR DGQAQEILAH 

       430        440        450        460        470        480 
NTSSIGKEIS TKMVGSDQHQ SITSSYKYPE GSPEERAVFM KASRKMLGPQ RASSPFLDLL 

       490        500        510        520        530        540 
ESGGLRDEPA QLQLHLARTP EWGQDLQLLL RIRRVPDSTH PQGPIGLLVR FCAQALLHGG 

       550        560        570        580        590        600 
GPRKPLWRHT VRVNLDFGKE TQRPLLLPYS NYRSKLTDEK LIRVSGIAEV EETGRSMLVL 

       610        620        630        640        650        660 
KDISLEPPHL SIEVSERAEV GKALRVHVTL TNTLMVALSS CTMVLEGSGL VNGQITKDLG 

       670        680        690        700        710 
TLVAGHTLQI QLDLYPTKAG PRQLQVLISS NEVKEIKGYK DIFVTAAGAP

« Hide

References

« Hide 'large scale' references
[1]"Evolutionary and biomedical insights from the rhesus macaque genome."
Gibbs R.A., Rogers J., Katze M.G., Bumgarner R., Weinstock G.M., Mardis E.R., Remington K.A., Strausberg R.L., Venter J.C., Wilson R.K., Batzer M.A., Bustamante C.D., Eichler E.E., Hahn M.W., Hardison R.C., Makova K.D., Miller W., Milosavljevic A. expand/collapse author list , Palermo R.E., Siepel A., Sikela J.M., Attaway T., Bell S., Bernard K.E., Buhay C.J., Chandrabose M.N., Dao M., Davis C., Delehaunty K.D., Ding Y., Dinh H.H., Dugan-Rocha S., Fulton L.A., Gabisi R.A., Garner T.T., Godfrey J., Hawes A.C., Hernandez J., Hines S., Holder M., Hume J., Jhangiani S.N., Joshi V., Khan Z.M., Kirkness E.F., Cree A., Fowler R.G., Lee S., Lewis L.R., Li Z., Liu Y.-S., Moore S.M., Muzny D., Nazareth L.V., Ngo D.N., Okwuonu G.O., Pai G., Parker D., Paul H.A., Pfannkoch C., Pohl C.S., Rogers Y.-H.C., Ruiz S.J., Sabo A., Santibanez J., Schneider B.W., Smith S.M., Sodergren E., Svatek A.F., Utterback T.R., Vattathil S., Warren W., White C.S., Chinwalla A.T., Feng Y., Halpern A.L., Hillier L.W., Huang X., Minx P., Nelson J.O., Pepin K.H., Qin X., Sutton G.G., Venter E., Walenz B.P., Wallis J.W., Worley K.C., Yang S.-P., Jones S.M., Marra M.A., Rocchi M., Schein J.E., Baertsch R., Clarke L., Csuros M., Glasscock J., Harris R.A., Havlak P., Jackson A.R., Jiang H., Liu Y., Messina D.N., Shen Y., Song H.X.-Z., Wylie T., Zhang L., Birney E., Han K., Konkel M.K., Lee J., Smit A.F.A., Ullmer B., Wang H., Xing J., Burhans R., Cheng Z., Karro J.E., Ma J., Raney B., She X., Cox M.J., Demuth J.P., Dumas L.J., Han S.-G., Hopkins J., Karimpour-Fard A., Kim Y.H., Pollack J.R., Vinar T., Addo-Quaye C., Degenhardt J., Denby A., Hubisz M.J., Indap A., Kosiol C., Lahn B.T., Lawson H.A., Marklein A., Nielsen R., Vallender E.J., Clark A.G., Ferguson B., Hernandez R.D., Hirani K., Kehrer-Sawatzki H., Kolb J., Patil S., Pu L.-L., Ren Y., Smith D.G., Wheeler D.A., Schenck I., Ball E.V., Chen R., Cooper D.N., Giardine B., Hsu F., Kent W.J., Lesk A., Nelson D.L., O'brien W.E., Pruefer K., Stenson P.D., Wallace J.C., Ke H., Liu X.-M., Wang P., Xiang A.P., Yang F., Barber G.P., Haussler D., Karolchik D., Kern A.D., Kuhn R.M., Smith K.E., Zwieg A.S.
Science 316:222-234(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 17573 Ensembl ENSMMUP00000029293.
[2]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: 17573 Ensembl ENSMMUP00000029293.

Cross-references

Sequence databases

RefSeqXP_001101742.1. XM_001101742.2.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSMMUT00000031302; ENSMMUP00000029293; ENSMMUG00000022251.
GeneID712676.
KEGGmcc:712676.

Organism-specific databases

CTD116179.

Phylogenomic databases

GeneTreeENSGT00690000101863.
KOK05623.
OMARFCAQAL.

Family and domain databases

Gene3D2.60.40.10. 3 hits.
InterProIPR023608. Gln_gamma-glutamylTfrase_euk.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
IPR002931. Transglutaminase-like.
IPR008958. Transglutaminase_C.
IPR013808. Transglutaminase_CS.
IPR001102. Transglutaminase_N.
[Graphical view]
PANTHERPTHR11590. PTHR11590. 1 hit.
PfamPF00927. Transglut_C. 1 hit.
PF01841. Transglut_core. 1 hit.
PF00868. Transglut_N. 1 hit.
[Graphical view]
PIRSFPIRSF000459. TGM_EBP42. 1 hit.
SMARTSM00460. TGc. 1 hit.
[Graphical view]
SUPFAMSSF81296. Ig_E-set. 1 hit.
SSF49309. Transglut_C. 2 hits.
PROSITEPS00547. TRANSGLUTAMINASES. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio19981878.

Entry information

Entry nameF6YVG4_MACMU
AccessionPrimary (citable) accession number: F6YVG4
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: March 6, 2013
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info