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F6WTV1

- F6WTV1_HORSE

UniProt

F6WTV1 - F6WTV1_HORSE

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Protein
Submitted name:

Uncharacterized protein

Gene

NEIL3

Organism
Equus caballus (Horse)
Status
Unreviewed - Annotation score: 2 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. bubble DNA binding Source: Ensembl
  2. damaged DNA binding Source: InterPro
  3. DNA-(apurinic or apyrimidinic site) lyase activity Source: InterPro
  4. DNA N-glycosylase activity Source: Ensembl
  5. double-stranded DNA binding Source: Ensembl
  6. single-stranded DNA binding Source: Ensembl
  7. zinc ion binding Source: InterPro

GO - Biological processi

  1. base-excision repair Source: InterPro
  2. nucleotide-excision repair Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:NEIL3Imported
OrganismiEquus caballus (Horse)Imported
Taxonomic identifieri9796 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaPerissodactylaEquidaeEquus
ProteomesiUP000002281: Chromosome 27

Subcellular locationi

GO - Cellular componenti

  1. nucleus Source: Ensembl
Complete GO annotation...

PTM / Processingi

Proteomic databases

PRIDEiF6WTV1.

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00730000110955.
InParanoidiF6WTV1.
KOiK10569.
OMAiICFFDSS.
OrthoDBiEOG7W153D.
TreeFamiTF331502.

Family and domain databases

InterProiIPR015886. DNA_glyclase/AP_lyase_DNA-bd.
IPR015887. DNA_glyclase_Znf_dom_DNA_BS.
IPR012319. DNA_glycosylase/AP_lyase_cat.
IPR010979. Ribosomal_S13-like_H2TH.
IPR000214. Znf_DNA_glyclase/AP_lyase.
IPR010666. Znf_GRF.
IPR001876. Znf_RanBP2.
[Graphical view]
PfamiPF01149. Fapy_DNA_glyco. 1 hit.
PF06831. H2TH. 1 hit.
PF06839. zf-GRF. 2 hits.
PF00641. zf-RanBP. 1 hit.
[Graphical view]
SMARTiSM00547. ZnF_RBZ. 1 hit.
[Graphical view]
SUPFAMiSSF46946. SSF46946. 1 hit.
SSF81624. SSF81624. 1 hit.
PROSITEiPS51068. FPG_CAT. 1 hit.
PS01242. ZF_FPG_1. 1 hit.
PS51066. ZF_FPG_2. 1 hit.
PS01358. ZF_RANBP2_1. 1 hit.
PS50199. ZF_RANBP2_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F6WTV1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MVEGPGCTLN GEKIRARVRP GQAVTAVRGS ALQSLGGPAW GAAAGAVVPA
60 70 80 90 100
QAAALKNKED SSQNVSRLFD GYVYSGVETL GKELFMYFGP KALWIHFGMK
110 120 130 140 150
GSIIINPPED KKKDGVSPVF EVQLTKDLIC FFDSSVELRN STESQQRIRI
160 170 180 190 200
MGELDICSPK FSFSRAESEV KKQKGRMLCD VLMDQKVLPG VGNIIKNEAL
210 220 230 240 250
FDSGLHPAVK VCQLTDEQTH HLVKMIRDCS ILFYKCRKAG CAISRHYKVY
260 270 280 290 300
KRPNCGQCCC KITVCRLGEN HRMTYFCPHC QKENPQHVDI CKLPTRNSTI
310 320 330 340 350
SWTSSRDNHL MDHVARKSEE QWTCVVCTLI NKPSSKACDA CLTSRPVDSI
360 370 380 390 400
LKNEDSSIAY SHLVKYPCNS FGNPNTEVKI NRKTAFGTTT LVLTDFSNKS
410 420 430 440 450
NALERKTSQN QTLDGEFQNS SPTNVCLRDT PHPSKERKNC VTQLSNEVSV
460 470 480 490 500
TPAVCSPSKL FSPAYKKLKR APSSSPDLKS HNRGFPNREL QIKMTDGPCA
510 520 530 540 550
GNASSPRCSQ HHRLCALRVV RKDGENKGRQ FYACPLPREA QCGFFQWADL
560 570 580 590 600
SFPFCDHGKR SIMRTVLKIG PNNGRNFFVC PLGKEKQCSF FQWAENGPGI

KILPGC
Length:606
Mass (Da):67,379
Last modified:July 27, 2011 - v1
Checksum:i2BCB620290688EA7
GO

Sequence databases

RefSeqiXP_001492738.2. XM_001492688.3.

Genome annotation databases

EnsembliENSECAT00000009361; ENSECAP00000007116; ENSECAG00000009121.
GeneIDi100060702.
KEGGiecb:100060702.

Cross-referencesi

Sequence databases

RefSeqi XP_001492738.2. XM_001492688.3.

3D structure databases

ModBasei Search...
MobiDBi Search...

Proteomic databases

PRIDEi F6WTV1.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSECAT00000009361 ; ENSECAP00000007116 ; ENSECAG00000009121 .
GeneIDi 100060702.
KEGGi ecb:100060702.

Organism-specific databases

CTDi 55247.

Phylogenomic databases

GeneTreei ENSGT00730000110955.
InParanoidi F6WTV1.
KOi K10569.
OMAi ICFFDSS.
OrthoDBi EOG7W153D.
TreeFami TF331502.

Family and domain databases

InterProi IPR015886. DNA_glyclase/AP_lyase_DNA-bd.
IPR015887. DNA_glyclase_Znf_dom_DNA_BS.
IPR012319. DNA_glycosylase/AP_lyase_cat.
IPR010979. Ribosomal_S13-like_H2TH.
IPR000214. Znf_DNA_glyclase/AP_lyase.
IPR010666. Znf_GRF.
IPR001876. Znf_RanBP2.
[Graphical view ]
Pfami PF01149. Fapy_DNA_glyco. 1 hit.
PF06831. H2TH. 1 hit.
PF06839. zf-GRF. 2 hits.
PF00641. zf-RanBP. 1 hit.
[Graphical view ]
SMARTi SM00547. ZnF_RBZ. 1 hit.
[Graphical view ]
SUPFAMi SSF46946. SSF46946. 1 hit.
SSF81624. SSF81624. 1 hit.
PROSITEi PS51068. FPG_CAT. 1 hit.
PS01242. ZF_FPG_1. 1 hit.
PS51066. ZF_FPG_2. 1 hit.
PS01358. ZF_RANBP2_1. 1 hit.
PS50199. ZF_RANBP2_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence, comparative analysis, and population genetics of the domestic horse."
    Broad Institute Genome Sequencing Platform, Broad Institute Whole Genome Assembly Team
    Wade C.M., Giulotto E., Sigurdsson S., Zoli M., Gnerre S., Imsland F., Lear T.L., Adelson D.L., Bailey E., Bellone R.R., Bloecker H., Distl O., Edgar R.C., Garber M., Leeb T., Mauceli E., MacLeod J.N., Penedo M.C.T.
    , Raison J.M., Sharpe T., Vogel J., Andersson L., Antczak D.F., Biagi T., Binns M.M., Chowdhary B.P., Coleman S.J., Della Valle G., Fryc S., Guerin G., Hasegawa T., Hill E.W., Jurka J., Kiialainen A., Lindgren G., Liu J., Magnani E., Mickelson J.R., Murray J., Nergadze S.G., Onofrio R., Pedroni S., Piras M.F., Raudsepp T., Rocchi M., Roeed K.H., Ryder O.A., Searle S., Skow L., Swinburne J.E., Syvaenen A.C., Tozaki T., Valberg S.J., Vaudin M., White J.R., Zody M.C., Lander E.S., Lindblad-Toh K.
    Science 326:865-867(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ThoroughbredImported.
  2. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: ThoroughbredImported.

Entry informationi

Entry nameiF6WTV1_HORSE
AccessioniPrimary (citable) accession number: F6WTV1
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: November 26, 2014
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3