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F6WTV1

- F6WTV1_HORSE

UniProt

F6WTV1 - F6WTV1_HORSE

Protein
Submitted name:

Uncharacterized protein

Gene

NEIL3

Organism
Equus caballus (Horse)
Status
Unreviewed - Annotation score: 2 out of 5- Protein predictedi
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    • History
      Entry version 15 (01 Oct 2014)
      Sequence version 1 (27 Jul 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. bubble DNA binding Source: Ensembl
    2. damaged DNA binding Source: InterPro
    3. DNA-(apurinic or apyrimidinic site) lyase activity Source: Ensembl
    4. DNA N-glycosylase activity Source: Ensembl
    5. double-stranded DNA binding Source: Ensembl
    6. single-stranded DNA binding Source: Ensembl
    7. zinc ion binding Source: InterPro

    GO - Biological processi

    1. base-excision repair Source: InterPro
    2. nucleotide-excision repair Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Uncharacterized proteinImported
    Gene namesi
    Name:NEIL3Imported
    OrganismiEquus caballus (Horse)Imported
    Taxonomic identifieri9796 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaPerissodactylaEquidaeEquus
    ProteomesiUP000002281: Chromosome 27

    Subcellular locationi

    GO - Cellular componenti

    1. nucleus Source: Ensembl

    PTM / Processingi

    Proteomic databases

    PRIDEiF6WTV1.

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00730000110955.
    KOiK10569.
    OMAiICFFDSS.
    OrthoDBiEOG7W153D.
    TreeFamiTF331502.

    Family and domain databases

    InterProiIPR015886. DNA_glyclase/AP_lyase_DNA-bd.
    IPR015887. DNA_glyclase_Znf_dom_DNA_BS.
    IPR012319. DNA_glycosylase/AP_lyase_cat.
    IPR010979. Ribosomal_S13-like_H2TH.
    IPR000214. Znf_DNA_glyclase/AP_lyase.
    IPR010666. Znf_GRF.
    IPR001876. Znf_RanBP2.
    [Graphical view]
    PfamiPF01149. Fapy_DNA_glyco. 1 hit.
    PF06831. H2TH. 1 hit.
    PF06839. zf-GRF. 2 hits.
    PF00641. zf-RanBP. 1 hit.
    [Graphical view]
    SMARTiSM00547. ZnF_RBZ. 1 hit.
    [Graphical view]
    SUPFAMiSSF46946. SSF46946. 1 hit.
    SSF81624. SSF81624. 1 hit.
    PROSITEiPS51068. FPG_CAT. 1 hit.
    PS01242. ZF_FPG_1. 1 hit.
    PS51066. ZF_FPG_2. 1 hit.
    PS01358. ZF_RANBP2_1. 1 hit.
    PS50199. ZF_RANBP2_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F6WTV1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MVEGPGCTLN GEKIRARVRP GQAVTAVRGS ALQSLGGPAW GAAAGAVVPA    50
    QAAALKNKED SSQNVSRLFD GYVYSGVETL GKELFMYFGP KALWIHFGMK 100
    GSIIINPPED KKKDGVSPVF EVQLTKDLIC FFDSSVELRN STESQQRIRI 150
    MGELDICSPK FSFSRAESEV KKQKGRMLCD VLMDQKVLPG VGNIIKNEAL 200
    FDSGLHPAVK VCQLTDEQTH HLVKMIRDCS ILFYKCRKAG CAISRHYKVY 250
    KRPNCGQCCC KITVCRLGEN HRMTYFCPHC QKENPQHVDI CKLPTRNSTI 300
    SWTSSRDNHL MDHVARKSEE QWTCVVCTLI NKPSSKACDA CLTSRPVDSI 350
    LKNEDSSIAY SHLVKYPCNS FGNPNTEVKI NRKTAFGTTT LVLTDFSNKS 400
    NALERKTSQN QTLDGEFQNS SPTNVCLRDT PHPSKERKNC VTQLSNEVSV 450
    TPAVCSPSKL FSPAYKKLKR APSSSPDLKS HNRGFPNREL QIKMTDGPCA 500
    GNASSPRCSQ HHRLCALRVV RKDGENKGRQ FYACPLPREA QCGFFQWADL 550
    SFPFCDHGKR SIMRTVLKIG PNNGRNFFVC PLGKEKQCSF FQWAENGPGI 600
    KILPGC 606
    Length:606
    Mass (Da):67,379
    Last modified:July 27, 2011 - v1
    Checksum:i2BCB620290688EA7
    GO

    Sequence databases

    RefSeqiXP_001492738.2. XM_001492688.3.

    Genome annotation databases

    EnsembliENSECAT00000009361; ENSECAP00000007116; ENSECAG00000009121.
    GeneIDi100060702.
    KEGGiecb:100060702.

    Cross-referencesi

    Sequence databases

    RefSeqi XP_001492738.2. XM_001492688.3.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi F6WTV1.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSECAT00000009361 ; ENSECAP00000007116 ; ENSECAG00000009121 .
    GeneIDi 100060702.
    KEGGi ecb:100060702.

    Organism-specific databases

    CTDi 55247.

    Phylogenomic databases

    GeneTreei ENSGT00730000110955.
    KOi K10569.
    OMAi ICFFDSS.
    OrthoDBi EOG7W153D.
    TreeFami TF331502.

    Family and domain databases

    InterProi IPR015886. DNA_glyclase/AP_lyase_DNA-bd.
    IPR015887. DNA_glyclase_Znf_dom_DNA_BS.
    IPR012319. DNA_glycosylase/AP_lyase_cat.
    IPR010979. Ribosomal_S13-like_H2TH.
    IPR000214. Znf_DNA_glyclase/AP_lyase.
    IPR010666. Znf_GRF.
    IPR001876. Znf_RanBP2.
    [Graphical view ]
    Pfami PF01149. Fapy_DNA_glyco. 1 hit.
    PF06831. H2TH. 1 hit.
    PF06839. zf-GRF. 2 hits.
    PF00641. zf-RanBP. 1 hit.
    [Graphical view ]
    SMARTi SM00547. ZnF_RBZ. 1 hit.
    [Graphical view ]
    SUPFAMi SSF46946. SSF46946. 1 hit.
    SSF81624. SSF81624. 1 hit.
    PROSITEi PS51068. FPG_CAT. 1 hit.
    PS01242. ZF_FPG_1. 1 hit.
    PS51066. ZF_FPG_2. 1 hit.
    PS01358. ZF_RANBP2_1. 1 hit.
    PS50199. ZF_RANBP2_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence, comparative analysis, and population genetics of the domestic horse."
      Broad Institute Genome Sequencing Platform, Broad Institute Whole Genome Assembly Team
      Wade C.M., Giulotto E., Sigurdsson S., Zoli M., Gnerre S., Imsland F., Lear T.L., Adelson D.L., Bailey E., Bellone R.R., Bloecker H., Distl O., Edgar R.C., Garber M., Leeb T., Mauceli E., MacLeod J.N., Penedo M.C.T.
      , Raison J.M., Sharpe T., Vogel J., Andersson L., Antczak D.F., Biagi T., Binns M.M., Chowdhary B.P., Coleman S.J., Della Valle G., Fryc S., Guerin G., Hasegawa T., Hill E.W., Jurka J., Kiialainen A., Lindgren G., Liu J., Magnani E., Mickelson J.R., Murray J., Nergadze S.G., Onofrio R., Pedroni S., Piras M.F., Raudsepp T., Rocchi M., Roeed K.H., Ryder O.A., Searle S., Skow L., Swinburne J.E., Syvaenen A.C., Tozaki T., Valberg S.J., Vaudin M., White J.R., Zody M.C., Lander E.S., Lindblad-Toh K.
      Science 326:865-867(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ThoroughbredImported.
    2. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: ThoroughbredImported.

    Entry informationi

    Entry nameiF6WTV1_HORSE
    AccessioniPrimary (citable) accession number: F6WTV1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 27, 2011
    Last sequence update: July 27, 2011
    Last modified: October 1, 2014
    This is version 15 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3