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F6WNI5

- F6WNI5_MONDO

UniProt

F6WNI5 - F6WNI5_MONDO

Protein
Submitted name:

Uncharacterized protein

Gene

LOC100017687

Organism
Monodelphis domestica (Gray short-tailed opossum)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
  1. Functioni

    GO - Molecular functioni

    1. DNA-directed RNA polymerase activity Source: InterPro
    2. nucleotide binding Source: InterPro

    GO - Biological processi

    1. transcription, DNA-templated Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Uncharacterized proteinImported
    Gene namesi
    Name:LOC100017687Imported
    OrganismiMonodelphis domestica (Gray short-tailed opossum)Imported
    Taxonomic identifieri13616 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaMetatheriaDidelphimorphiaDidelphidaeMonodelphis
    ProteomesiUP000002280: Chromosome 3

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00390000004912.
    OMAiWAQENIN.
    TreeFamiTF103039.

    Family and domain databases

    InterProiIPR010997. HRDC-like.
    IPR005574. RNA_pol_II_Rpb4.
    IPR006590. RNA_pol_II_Rpb4_core.
    [Graphical view]
    PfamiPF03874. RNA_pol_Rpb4. 1 hit.
    [Graphical view]
    SMARTiSM00657. RPOL4c. 1 hit.
    [Graphical view]
    SUPFAMiSSF47819. SSF47819. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    F6WNI5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAAGGRDPGA GHVEEEALQL VFPREFETAQ TLLNSEVHML LEHRKQQHES    50
    GQDARGLPVV FWKTLDYAAR FSRFQNRETI ASVRGLLLQK KLHKFELAAL 100
    ANLCPETAEE AKALIPSLAG RLEDEDLQEV LDDIQTKRSF QY 142
    Length:142
    Mass (Da):16,071
    Last modified:July 27, 2011 - v1
    Checksum:i22455879BB66B940
    GO

    Genome annotation databases

    EnsembliENSMODT00000038213; ENSMODP00000036620; ENSMODG00000025032.

    Cross-referencesi

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMODT00000038213 ; ENSMODP00000036620 ; ENSMODG00000025032 .

    Phylogenomic databases

    GeneTreei ENSGT00390000004912.
    OMAi WAQENIN.
    TreeFami TF103039.

    Family and domain databases

    InterProi IPR010997. HRDC-like.
    IPR005574. RNA_pol_II_Rpb4.
    IPR006590. RNA_pol_II_Rpb4_core.
    [Graphical view ]
    Pfami PF03874. RNA_pol_Rpb4. 1 hit.
    [Graphical view ]
    SMARTi SM00657. RPOL4c. 1 hit.
    [Graphical view ]
    SUPFAMi SSF47819. SSF47819. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences."
      Mikkelsen T.S., Wakefield M.J., Aken B., Amemiya C.T., Chang J.L., Duke S., Garber M., Gentles A.J., Goodstadt L., Heger A., Jurka J., Kamal M., Mauceli E., Searle S.M., Sharpe T., Baker M.L., Batzer M.A., Benos P.V.
      , Belov K., Clamp M., Cook A., Cuff J., Das R., Davidow L., Deakin J.E., Fazzari M.J., Glass J.L., Grabherr M., Greally J.M., Gu W., Hore T.A., Huttley G.A., Kleber M., Jirtle R.L., Koina E., Lee J.T., Mahony S., Marra M.A., Miller R.D., Nicholls R.D., Oda M., Papenfuss A.T., Parra Z.E., Pollock D.D., Ray D.A., Schein J.E., Speed T.P., Thompson K., VandeBerg J.L., Wade C.M., Walker J.A., Waters P.D., Webber C., Weidman J.R., Xie X., Zody M.C., Baldwin J., Abdouelleil A., Abdulkadir J., Abebe A., Abera B., Abreu J., Acer S.C., Aftuck L., Alexander A., An P., Anderson E., Anderson S., Arachi H., Azer M., Bachantsang P., Barry A., Bayul T., Berlin A., Bessette D., Bloom T., Bloom T., Boguslavskiy L., Bonnet C., Boukhgalter B., Bourzgui I., Brown A., Cahill P., Channer S., Cheshatsang Y., Chuda L., Citroen M., Collymore A., Cooke P., Costello M., D'Aco K., Daza R., De Haan G., DeGray S., DeMaso C., Dhargay N., Dooley K., Dooley E., Doricent M., Dorje P., Dorjee K., Dupes A., Elong R., Falk J., Farina A., Faro S., Ferguson D., Fisher S., Foley C.D., Franke A., Friedrich D., Gadbois L., Gearin G., Gearin C.R., Giannoukos G., Goode T., Graham J., Grandbois E., Grewal S., Gyaltsen K., Hafez N., Hagos B., Hall J., Henson C., Hollinger A., Honan T., Huard M.D., Hughes L., Hurhula B., Husby M.E., Kamat A., Kanga B., Kashin S., Khazanovich D., Kisner P., Lance K., Lara M., Lee W., Lennon N., Letendre F., LeVine R., Lipovsky A., Liu X., Liu J., Liu S., Lokyitsang T., Lokyitsang Y., Lubonja R., Lui A., MacDonald P., Magnisalis V., Maru K., Matthews C., McCusker W., McDonough S., Mehta T., Meldrim J., Meneus L., Mihai O., Mihalev A., Mihova T., Mittelman R., Mlenga V., Montmayeur A., Mulrain L., Navidi A., Naylor J., Negash T., Nguyen T., Nguyen N., Nicol R., Norbu C., Norbu N., Novod N., O'Neill B., Osman S., Markiewicz E., Oyono O.L., Patti C., Phunkhang P., Pierre F., Priest M., Raghuraman S., Rege F., Reyes R., Rise C., Rogov P., Ross K., Ryan E., Settipalli S., Shea T., Sherpa N., Shi L., Shih D., Sparrow T., Spaulding J., Stalker J., Stange-Thomann N., Stavropoulos S., Stone C., Strader C., Tesfaye S., Thomson T., Thoulutsang Y., Thoulutsang D., Topham K., Topping I., Tsamla T., Vassiliev H., Vo A., Wangchuk T., Wangdi T., Weiand M., Wilkinson J., Wilson A., Yadav S., Young G., Yu Q., Zembek L., Zhong D., Zimmer A., Zwirko Z., Jaffe D.B., Alvarez P., Brockman W., Butler J., Chin C., Gnerre S., MacCallum I., Graves J.A., Ponting C.P., Breen M., Samollow P.B., Lander E.S., Lindblad-Toh K.
      Nature 447:167-177(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    2. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.

    Entry informationi

    Entry nameiF6WNI5_MONDO
    AccessioniPrimary (citable) accession number: F6WNI5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 27, 2011
    Last sequence update: July 27, 2011
    Last modified: October 1, 2014
    This is version 15 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3