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Protein
Submitted name:

SRY-box 17

Gene

SOX17

Organism
Callithrix jacchus (White-tufted-ear marmoset)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi68 – 136HMG boxPROSITE-ProRule annotationAdd BLAST69

GO - Molecular functioni

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
SRY-box 17Imported
Submitted name:
Transcription factor SOX-17Imported
Gene namesi
Name:SOX17Imported
OrganismiCallithrix jacchus (White-tufted-ear marmoset)Imported
Taxonomic identifieri9483 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniPlatyrrhiniCebidaeCallitrichinaeCallithrixCallithrix
Proteomesi
  • UP000008225 Componenti: Chromosome 16

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotation

Interactioni

Protein-protein interaction databases

STRINGi9483.ENSCJAP00000030751

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini68 – 136HMG boxInterPro annotationAdd BLAST69
Domaini280 – 413Sox C-terminalInterPro annotationAdd BLAST134

Phylogenomic databases

eggNOGiENOG410IPZH Eukaryota
ENOG41114B8 LUCA
GeneTreeiENSGT00760000118988
KOiK04495
OMAiHMGGHYR
OrthoDBiEOG091G0CYU

Family and domain databases

Gene3Di1.10.30.10, 1 hit
InterProiView protein in InterPro
IPR009071 HMG_box_dom
IPR036910 HMG_box_dom_sf
IPR033392 Sox7/17/18_central
IPR021934 Sox_C
PfamiView protein in Pfam
PF00505 HMG_box, 1 hit
PF12067 Sox17_18_mid, 1 hit
SMARTiView protein in SMART
SM00398 HMG, 1 hit
SUPFAMiSSF47095 SSF47095, 1 hit
PROSITEiView protein in PROSITE
PS50118 HMG_BOX_2, 1 hit
PS51516 SOX_C, 1 hit

Sequencei

Sequence statusi: Complete.

F6W913-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSPDAGYAS DDQSQTRSAL PAVMAGLGPC PWAESLSPIG DMKVKGEAPA
60 70 80 90 100
SSGAPAGSAG RAKGESRIRR PMNAFMVWAK DERKRLAQQN PDLHNAELSK
110 120 130 140 150
MLGKSWKALT LAEKRPFVEE AERLRVQHMQ DHPNYKYRPR RRKQVKRLKR
160 170 180 190 200
VEGGFLHGLA EPQAAALGPE GGRVAMDSLG LPFPEQGFPA GPPLLPPHMG
210 220 230 240 250
GHYRDCQGLG ASPLDGYPLP TPDTSPLDGV DPDPAFFAAP MPGDCPAAGA
260 270 280 290 300
YSYAQVSDYA GPLEPPSGPM HPRLGPEPAG PSMPGLLAPP SALHMYYGAV
310 320 330 340 350
GSPGAGGGRG FQMQPQPQHQ HQHQHHPPGP GQPSPPPEAL PCRDGTDPSQ
360 370 380 390 400
PAELLGEVDR TEFEQYLHFV CKPEMGLSYQ GHDSSVTLPD SHGAISSVVS
410
DASSAVYYCN YPDV
Length:414
Mass (Da):44,080
Last modified:July 27, 2011 - v1
Checksum:i4A0A964E3455C45F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
ACFV01107561 Genomic DNA No translation available.
GAMT01000967 mRNA Translation: JAB10894.1
RefSeqiXP_002758971.1, XM_002758925.4
XP_017820831.1, XM_017965342.1

Genome annotation databases

EnsembliENSCJAT00000032497; ENSCJAP00000030751; ENSCJAG00000016710
GeneIDi100396115
KEGGicjc:100396115

Similar proteinsi

Entry informationi

Entry nameiF6W913_CALJA
AccessioniPrimary (citable) accession number: F6W913
Entry historyiIntegrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: April 25, 2018
This is version 49 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health