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Protein
Submitted name:

PHD finger protein 21A

Gene

phf21a

Organism
Xenopus tropicalis (Western clawed frog) (Silurana tropicalis)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
PHD finger protein 21AImported
Gene namesi
Name:phf21aImported
OrganismiXenopus tropicalis (Western clawed frog) (Silurana tropicalis)Imported
Taxonomic identifieri8364 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusSilurana
Proteomesi
  • UP000008143 Componenti: Unassembled WGS sequence

Organism-specific databases

XenbaseiXB-GENE-6032673. phf21a.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PaxDbiF6VMK2.

Expressioni

Gene expression databases

BgeeiENSXETG00000001031.

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi8364.ENSXETP00000002259.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini436 – 483PHD-typeInterPro annotationAdd BLAST48

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili510 – 548Sequence analysisAdd BLAST39

Keywords - Domaini

Coiled coilSequence analysis, Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiENOG410IREA. Eukaryota.
ENOG41112YM. LUCA.
GeneTreeiENSGT00530000063984.
InParanoidiF6VMK2.
OMAiHEDFCTV.
OrthoDBiEOG091G03CB.
TreeFamiTF331518.

Family and domain databases

Gene3Di3.30.40.10. 1 hit.
InterProiView protein in InterPro
IPR019786. Zinc_finger_PHD-type_CS.
IPR011011. Znf_FYVE_PHD.
IPR001965. Znf_PHD.
IPR019787. Znf_PHD-finger.
IPR013083. Znf_RING/FYVE/PHD.
PfamiView protein in Pfam
PF00628. PHD. 1 hit.
SMARTiView protein in SMART
SM00249. PHD. 1 hit.
SUPFAMiSSF57903. SSF57903. 1 hit.
PROSITEiView protein in PROSITE
PS01359. ZF_PHD_1. 1 hit.
PS50016. ZF_PHD_2. 1 hit.

Sequencei

Sequence statusi: Complete.

F6VMK2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
QRLVVEQLRK NLIVKQELPD NKLLIQPLLQ LESKPPTPQV QQQPQQIQLQ
60 70 80 90 100
QLQSQTVSHA PTVSLPGFSG SQKTVATASM ITAKTLPLVL KAAAAAMPAS
110 120 130 140 150
VIGQRPTIAM VTAINSQKAV LGTDAQNAAV NLQTSNKVNS QGAETFQIVA
160 170 180 190 200
KNAVTLVQAT TSQPIKVPQF IPPPRLTPRP NFLPQVRPKP AAQNNIPIAP
210 220 230 240 250
APPPMLAAPQ LIQRPVMLTT KLTPTTQNSI HPVRIVNGQP TAISKAFPTA
260 270 280 290 300
QLTSIVIAAP GTRLAAPQTV HLPKPNVEKQ AVKAQVETTE KPTEISTPVP
310 320 330 340 350
PAPKPKREEN PQKLAFMVSL GLVTHDHLEE IQSKRQERKR RTTANPVYSG
360 370 380 390 400
AVFEPEKEER LIFAVQATVH LGLRNRGRPP KYNTVLGLGA LPPTSPPSSH
410 420 430 440 450
PDSPESEKTQ ITCNLPASVL PVSLPSPFST DSDIHEDFCS ICRKSGQLLM
460 470 480 490 500
CDTCSRVYHL DCLEPPLKTI PKGMWICPKC QDQMMKKEDA IPWPGTLAIV
510 520 530 540 550
HSYIAYKAAK EEEKQKLLKW STDLKQEREQ LEQKMKQLSG SIAKCMDMKN
560 570 580 590 600
SILSRQKDMH SSLEKVKSLI RLIQDIDLTK PVNSEVTSNH SQDCTATANS
610 620
PLPEPVTASL PSPSGAQNCN QAEEPK
Length:626
Mass (Da):68,357
Last modified:July 27, 2011 - v1
Checksum:i543B4568E569DC89
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAMC01029994 Genomic DNA. No translation available.
AAMC01029995 Genomic DNA. No translation available.
AAMC01029996 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSXETT00000002259; ENSXETP00000002259; ENSXETG00000001031.

Similar proteinsi

Entry informationi

Entry nameiF6VMK2_XENTR
AccessioniPrimary (citable) accession number: F6VMK2
Entry historyiIntegrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: September 27, 2017
This is version 38 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported