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Protein
Submitted name:

Sequestosome-1

Gene

Sqstm1

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Sequestosome-1Imported
Gene namesi
Name:Sqstm1Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 11

Organism-specific databases

MGIiMGI:107931. Sqstm1.

PTM / Processingi

Proteomic databases

EPDiF6VD69.
PeptideAtlasiF6VD69.

Expressioni

Gene expression databases

BgeeiF6VD69.
ExpressionAtlasiF6VD69. baseline and differential.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini58 – 10346UBAInterPro annotationAdd
BLAST

Phylogenomic databases

GeneTreeiENSGT00390000002781.

Family and domain databases

InterProiIPR015940. UBA.
IPR009060. UBA-like.
[Graphical view]
PfamiPF16577. UBA_5. 1 hit.
[Graphical view]
SMARTiSM00165. UBA. 1 hit.
[Graphical view]
SUPFAMiSSF46934. SSF46934. 1 hit.
PROSITEiPS50030. UBA. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

F6VD69-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
GTEDKSNTQP SSCSSEVSKP DGAGEGPAQS LTEQMKKIAL ESVGQPEEAA
60 70 80 90 100
LYPHLPPEAD PRLIESLSQM LSMGFSDEGG WLTRLLQTKN YDIGAALDTI

QYSKHPPPL
Length:109
Mass (Da):11,698
Last modified:July 27, 2011 - v1
Checksum:i4F843FD487FADED2
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL627187 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSMUST00000136936; ENSMUSP00000120442; ENSMUSG00000015837.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL627187 Genomic DNA. No translation available.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

EPDiF6VD69.
PeptideAtlasiF6VD69.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000136936; ENSMUSP00000120442; ENSMUSG00000015837.

Organism-specific databases

MGIiMGI:107931. Sqstm1.

Phylogenomic databases

GeneTreeiENSGT00390000002781.

Miscellaneous databases

ChiTaRSiSqstm1. mouse.
SOURCEiSearch...

Gene expression databases

BgeeiF6VD69.
ExpressionAtlasiF6VD69. baseline and differential.

Family and domain databases

InterProiIPR015940. UBA.
IPR009060. UBA-like.
[Graphical view]
PfamiPF16577. UBA_5. 1 hit.
[Graphical view]
SMARTiSM00165. UBA. 1 hit.
[Graphical view]
SUPFAMiSSF46934. SSF46934. 1 hit.
PROSITEiPS50030. UBA. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The phagosomal proteome in interferon-gamma-activated macrophages."
    Trost M., English L., Lemieux S., Courcelles M., Desjardins M., Thibault P.
    Immunity 30:143-154(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  3. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  4. Ensembl
    Submitted (JUN-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiF6VD69_MOUSE
AccessioniPrimary (citable) accession number: F6VD69
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: July 6, 2016
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.