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Protein
Submitted name:

RNA-binding protein Raly isoform 1

Gene

RALY

Organism
Callithrix jacchus (White-tufted-ear marmoset)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Keywordsi

Molecular functionRNA-bindingPROSITE-ProRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
RNA-binding protein Raly isoform 1Imported
Gene namesi
Name:RALYImported
OrganismiCallithrix jacchus (White-tufted-ear marmoset)Imported
Taxonomic identifieri9483 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniPlatyrrhiniCebidaeCallitrichinaeCallithrixCallithrix
Proteomesi
  • UP000008225 Componenti: Chromosome 5

Interactioni

Protein-protein interaction databases

STRINGi9483.ENSCJAP00000042753.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini21 – 92RRMInterPro annotationAdd BLAST72

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili187 – 214Sequence analysisAdd BLAST28

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG0118. Eukaryota.
COG0724. LUCA.
GeneTreeiENSGT00390000006718.
KOiK12895.
OMAiXLFDYRG.
OrthoDBiEOG091G0O1Q.
TreeFamiTF330974.

Family and domain databases

CDDicd12604. RRM_RALY. 1 hit.
InterProiView protein in InterPro
IPR017347. hnRNP_C.
IPR034502. RALY_RRM.
IPR035979. RBD_domain_sf.
IPR000504. RRM_dom.
PfamiView protein in Pfam
PF00076. RRM_1. 1 hit.
PIRSFiPIRSF037992. hnRNP-C_Raly. 1 hit.
SMARTiView protein in SMART
SM00360. RRM. 1 hit.
SUPFAMiSSF54928. SSF54928. 1 hit.
PROSITEiView protein in PROSITE
PS50102. RRM. 1 hit.

Sequencei

Sequence statusi: Complete.

F6V468-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSLKIQASNV TNKNDPKSIN SRVFIGNLNT ALVKKSDVET IFSKYGRVAG
60 70 80 90 100
CSVHKGYAFV QYSNERHARA AVLGENGRVL AGQTLDINMA GEPKPDRPKG
110 120 130 140 150
LKRAASAIYS GYIFDYDYYR DDFYDRLFDY RGRLSPVPVP RAVPVKRPRV
160 170 180 190 200
TVPLVRRVKT NIPVKLFARS TAITTSSAKI KLKSSELQAI KTELTQIKSN
210 220 230 240 250
IDALLSRLEQ IAAEQKANPD GKKKGDGGGG GGGGSGGSGG GGGGGGGGGG
260 270 280 290 300
GGSGSSRPPV PQENTTSEAG LPQGEARTRD DGDEEGLLTH SEEELEHSQD

TDADDGALQ
Length:309
Mass (Da):32,706
Last modified:July 27, 2011 - v1
Checksum:i6E826B92E598B578
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
ACFV01105807 Genomic DNA. No translation available.
ACFV01105808 Genomic DNA. No translation available.
ACFV01105809 Genomic DNA. No translation available.
ACFV01105810 Genomic DNA. No translation available.
ACFV01105811 Genomic DNA. No translation available.
ACFV01105812 Genomic DNA. No translation available.
ACFV01105813 Genomic DNA. No translation available.
GAMT01001844 mRNA. Translation: JAB10017.1.
GAMR01003301 mRNA. Translation: JAB30631.1.
GAMP01001070 mRNA. Translation: JAB51685.1.
RefSeqiXP_002747313.1. XM_002747267.3.
XP_008993756.1. XM_008995508.2.
XP_008993757.1. XM_008995509.2.

Genome annotation databases

EnsembliENSCJAT00000054323; ENSCJAP00000042753; ENSCJAG00000018361.
GeneIDi100401730.
KEGGicjc:100401730.

Similar proteinsi

Entry informationi

Entry nameiF6V468_CALJA
AccessioniPrimary (citable) accession number: F6V468
Entry historyiIntegrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: October 25, 2017
This is version 42 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported