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Protein
Submitted name:

RAR-related orphan receptor A

Gene

rora

Organism
Xenopus tropicalis (Western clawed frog) (Silurana tropicalis)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi15 – 90Nuclear receptorPROSITE-ProRule annotationAdd BLAST76

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation, ReceptorUniRule annotationSAAS annotation
Biological processTranscription, Transcription regulationPROSITE-ProRule annotationSAAS annotation
LigandMetal-binding, Zinc

Enzyme and pathway databases

ReactomeiR-XTR-383280 Nuclear Receptor transcription pathway

Names & Taxonomyi

Protein namesi
Submitted name:
RAR-related orphan receptor AImported
Gene namesi
Name:roraImported
OrganismiXenopus tropicalis (Western clawed frog) (Silurana tropicalis)Imported
Taxonomic identifieri8364 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusSilurana
Proteomesi
  • UP000008143 Componenti: Unassembled WGS sequence

Organism-specific databases

XenbaseiXB-GENE-478535 rora

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

PTM / Processingi

Proteomic databases

PaxDbiF6UUA0

Expressioni

Gene expression databases

BgeeiENSXETG00000021123

Interactioni

Protein-protein interaction databases

STRINGi8364.ENSXETP00000045670

Structurei

3D structure databases

ProteinModelPortaliF6UUA0
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini15 – 90Nuclear receptorInterPro annotationAdd BLAST76
Domaini213 – 451NR LBDInterPro annotationAdd BLAST239

Sequence similaritiesi

Belongs to the nuclear hormone receptor family.UniRule annotationSAAS annotation

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG4216 Eukaryota
ENOG410XUGR LUCA
GeneTreeiENSGT00870000136388
InParanoidiF6UUA0
OMAiYQNKPRE
OrthoDBiEOG091G0649
TreeFamiTF319910

Family and domain databases

Gene3Di3.30.50.10, 1 hit
InterProiView protein in InterPro
IPR035500 NHR_like_dom_sf
IPR000536 Nucl_hrmn_rcpt_lig-bd
IPR001723 Nuclear_hrmn_rcpt
IPR003079 ROR_rcpt
IPR001628 Znf_hrmn_rcpt
IPR013088 Znf_NHR/GATA
PfamiView protein in Pfam
PF00104 Hormone_recep, 1 hit
PF00105 zf-C4, 1 hit
PRINTSiPR01293 RORNUCRECPTR
PR00398 STRDHORMONER
PR00047 STROIDFINGER
SMARTiView protein in SMART
SM00430 HOLI, 1 hit
SM00399 ZnF_C4, 1 hit
SUPFAMiSSF48508 SSF48508, 1 hit
PROSITEiView protein in PROSITE
PS51843 NR_LBD, 1 hit
PS00031 NUCLEAR_REC_DBD_1, 1 hit
PS51030 NUCLEAR_REC_DBD_2, 1 hit

Sequencei

Sequence statusi: Complete.

F6UUA0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
INSLLYSHST AQIEIIPCKI CGDKSSGIHY GVITCEGCKG FFRRSQQSNA
60 70 80 90 100
TYSCPRQKNC LIDRTSRNRC QHCRLQKCLA VGMSRDAVKF GRMSKKQRDS
110 120 130 140 150
LYAEVQKHRM QQQRDHQQPP GEAEPLNPAG YGLTPNGLTE LRDDLGGYME
160 170 180 190 200
EESKNDSTVN SFYLDIQPSP DQSGLDVNGI KPEPLCDYTP ASSFFPYCSF
210 220 230 240 250
TNGETSPTIS MAELEHLAQN ISKSHMETCQ YLREELQQLM WQTFLQEEID
260 270 280 290 300
NYQSKQREVM WQLCAVKITE AIQYVVEFAK RIDGFMELCQ NDQIVLLKAG
310 320 330 340 350
SLEVVFIRMC RAFDSQNNTV YFDGKYAGIE VFKALGCEDF ISFVFEFGKS
360 370 380 390 400
LCSLHLTEDE IALFSAFVLM SGDRSWLQEK MKIEKLQQKI QLTLQHVLQK
410 420 430 440 450
NHREDGILTK LICKVSTLRA LCGRHAEKLM AFKAIYPDIV RHHFPPLYKE
460
LFTSEYEPAM QLEG
Length:464
Mass (Da):53,139
Last modified:July 27, 2011 - v1
Checksum:iFBD37A90C0C57344
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAMC01070855 Genomic DNA No translation available.
AAMC01070856 Genomic DNA No translation available.
AAMC01070857 Genomic DNA No translation available.
AAMC01070858 Genomic DNA No translation available.
AAMC01070859 Genomic DNA No translation available.
AAMC01070860 Genomic DNA No translation available.

Genome annotation databases

EnsembliENSXETT00000045670; ENSXETP00000045670; ENSXETG00000021123

Similar proteinsi

Entry informationi

Entry nameiF6UUA0_XENTR
AccessioniPrimary (citable) accession number: F6UUA0
Entry historyiIntegrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: May 23, 2018
This is version 60 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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