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F6UUA0

- F6UUA0_XENTR

UniProt

F6UUA0 - F6UUA0_XENTR

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Protein
Submitted name:

Uncharacterized protein

Gene

rora

Organism
Xenopus tropicalis (Western clawed frog) (Silurana tropicalis)
Status
Unreviewed - Annotation score: 1 out of 5- Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity Source: InterPro
  2. sequence-specific DNA binding Source: InterPro
  3. steroid hormone receptor activity Source: InterPro
  4. zinc ion binding Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

ReceptorUniRule annotation

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation, Metal-binding, Zinc

Enzyme and pathway databases

ReactomeiREACT_210122. Nuclear Receptor transcription pathway.
REACT_214942. RORA activates circadian gene expression.
REACT_218703. Circadian Clock.
REACT_221472. PPARA activates gene expression.
REACT_225393. REV-ERBA represses gene expression.
REACT_226491. BMAL1:CLOCK,NPAS2 activates circadian gene expression.

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:roraImported
OrganismiXenopus tropicalis (Western clawed frog) (Silurana tropicalis)Imported
Taxonomic identifieri8364 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusSilurana
ProteomesiUP000008143: Unplaced

Organism-specific databases

XenbaseiXB-GENE-478535. rora.

Subcellular locationi

GO - Cellular componenti

  1. nucleus Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

NucleusUniRule annotationSAAS annotation

Structurei

3D structure databases

ProteinModelPortaliF6UUA0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the nuclear hormone receptor family.UniRule annotation
Contains nuclear receptor DNA-binding domain.SAAS annotation

Keywords - Domaini

Zinc-fingerUniRule annotationSAAS annotation

Phylogenomic databases

GeneTreeiENSGT00760000119049.
InParanoidiF6UUA0.
OMAiGHCLTGQ.
OrthoDBiEOG79PJNW.
TreeFamiTF319910.

Family and domain databases

Gene3Di1.10.565.10. 2 hits.
3.30.50.10. 1 hit.
InterProiIPR008946. Nucl_hormone_rcpt_ligand-bd.
IPR000536. Nucl_hrmn_rcpt_lig-bd_core.
IPR003079. ROR_rcpt.
IPR001723. Str_hrmn_rcpt.
IPR001628. Znf_hrmn_rcpt.
IPR013088. Znf_NHR/GATA.
[Graphical view]
PfamiPF00104. Hormone_recep. 1 hit.
PF00105. zf-C4. 1 hit.
[Graphical view]
PRINTSiPR01293. RORNUCRECPTR.
PR00398. STRDHORMONER.
PR00047. STROIDFINGER.
SMARTiSM00430. HOLI. 1 hit.
SM00399. ZnF_C4. 1 hit.
[Graphical view]
SUPFAMiSSF48508. SSF48508. 1 hit.
PROSITEiPS00031. NUCLEAR_REC_DBD_1. 1 hit.
PS51030. NUCLEAR_REC_DBD_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

F6UUA0-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
INSLLYSHST AQIEIIPCKI CGDKSSGIHY GVITCEGCKG FFRRSQQSNA
60 70 80 90 100
TYSCPRQKNC LIDRTSRNRC QHCRLQKCLA VGMSRDAVKF GRMSKKQRDS
110 120 130 140 150
LYAEVQKHRM QQQRDHQQPP GEAEPLNPAG YGLTPNGLTE LRDDLGGYME
160 170 180 190 200
EESKNDSTVN SFYLDIQPSP DQSGLDVNGI KPEPLCDYTP ASSFFPYCSF
210 220 230 240 250
TNGETSPTIS MAELEHLAQN ISKSHMETCQ YLREELQQLM WQTFLQEEID
260 270 280 290 300
NYQSKQREVM WQLCAVKITE AIQYVVEFAK RIDGFMELCQ NDQIVLLKAG
310 320 330 340 350
SLEVVFIRMC RAFDSQNNTV YFDGKYAGIE VFKALGCEDF ISFVFEFGKS
360 370 380 390 400
LCSLHLTEDE IALFSAFVLM SGDRSWLQEK MKIEKLQQKI QLTLQHVLQK
410 420 430 440 450
NHREDGILTK LICKVSTLRA LCGRHAEKLM AFKAIYPDIV RHHFPPLYKE
460
LFTSEYEPAM QLEG
Length:464
Mass (Da):53,139
Last modified:July 27, 2011 - v1
Checksum:iFBD37A90C0C57344
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAMC01070855 Genomic DNA. No translation available.
AAMC01070856 Genomic DNA. No translation available.
AAMC01070857 Genomic DNA. No translation available.
AAMC01070858 Genomic DNA. No translation available.
AAMC01070859 Genomic DNA. No translation available.
AAMC01070860 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSXETT00000045670; ENSXETP00000045670; ENSXETG00000021123.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAMC01070855 Genomic DNA. No translation available.
AAMC01070856 Genomic DNA. No translation available.
AAMC01070857 Genomic DNA. No translation available.
AAMC01070858 Genomic DNA. No translation available.
AAMC01070859 Genomic DNA. No translation available.
AAMC01070860 Genomic DNA. No translation available.

3D structure databases

ProteinModelPortali F6UUA0.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSXETT00000045670 ; ENSXETP00000045670 ; ENSXETG00000021123 .

Organism-specific databases

Xenbasei XB-GENE-478535. rora.

Phylogenomic databases

GeneTreei ENSGT00760000119049.
InParanoidi F6UUA0.
OMAi GHCLTGQ.
OrthoDBi EOG79PJNW.
TreeFami TF319910.

Enzyme and pathway databases

Reactomei REACT_210122. Nuclear Receptor transcription pathway.
REACT_214942. RORA activates circadian gene expression.
REACT_218703. Circadian Clock.
REACT_221472. PPARA activates gene expression.
REACT_225393. REV-ERBA represses gene expression.
REACT_226491. BMAL1:CLOCK,NPAS2 activates circadian gene expression.

Family and domain databases

Gene3Di 1.10.565.10. 2 hits.
3.30.50.10. 1 hit.
InterProi IPR008946. Nucl_hormone_rcpt_ligand-bd.
IPR000536. Nucl_hrmn_rcpt_lig-bd_core.
IPR003079. ROR_rcpt.
IPR001723. Str_hrmn_rcpt.
IPR001628. Znf_hrmn_rcpt.
IPR013088. Znf_NHR/GATA.
[Graphical view ]
Pfami PF00104. Hormone_recep. 1 hit.
PF00105. zf-C4. 1 hit.
[Graphical view ]
PRINTSi PR01293. RORNUCRECPTR.
PR00398. STRDHORMONER.
PR00047. STROIDFINGER.
SMARTi SM00430. HOLI. 1 hit.
SM00399. ZnF_C4. 1 hit.
[Graphical view ]
SUPFAMi SSF48508. SSF48508. 1 hit.
PROSITEi PS00031. NUCLEAR_REC_DBD_1. 1 hit.
PS51030. NUCLEAR_REC_DBD_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. Ensembl
    Submitted (JUN-2011) to UniProtKB
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiF6UUA0_XENTR
AccessioniPrimary (citable) accession number: F6UUA0
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: November 26, 2014
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3