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F6UUA0

- F6UUA0_XENTR

UniProt

F6UUA0 - F6UUA0_XENTR

Protein
Submitted name:

Uncharacterized protein

Gene

rora

Organism
Xenopus tropicalis (Western clawed frog) (Silurana tropicalis)
Status
Unreviewed - Annotation score: 1 out of 5- Protein inferred from homologyi
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    • History
      Entry version 25 (01 Oct 2014)
      Sequence version 1 (27 Jul 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity Source: InterPro
    2. sequence-specific DNA binding Source: InterPro
    3. steroid hormone receptor activity Source: InterPro
    4. zinc ion binding Source: InterPro

    Keywords - Molecular functioni

    ReceptorUniRule annotation

    Keywords - Biological processi

    Transcription, Transcription regulationUniRule annotationSAAS annotation

    Keywords - Ligandi

    DNA-bindingUniRule annotationSAAS annotation, Metal-binding, Zinc

    Enzyme and pathway databases

    ReactomeiREACT_210122. Nuclear Receptor transcription pathway.
    REACT_214942. RORA activates circadian gene expression.
    REACT_218703. Circadian Clock.
    REACT_221472. PPARA activates gene expression.
    REACT_225393. REV-ERBA represses gene expression.
    REACT_226491. BMAL1:CLOCK,NPAS2 activates circadian gene expression.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Uncharacterized proteinImported
    Gene namesi
    Name:roraImported
    OrganismiXenopus tropicalis (Western clawed frog) (Silurana tropicalis)Imported
    Taxonomic identifieri8364 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusSilurana
    ProteomesiUP000008143: Unplaced

    Organism-specific databases

    XenbaseiXB-GENE-478535. rora.

    Subcellular locationi

    GO - Cellular componenti

    1. nucleus Source: UniProtKB-KW

    Keywords - Cellular componenti

    NucleusUniRule annotationSAAS annotation

    Structurei

    3D structure databases

    ProteinModelPortaliF6UUA0.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the nuclear hormone receptor family.UniRule annotation
    Contains nuclear receptor DNA-binding domain.SAAS annotation

    Keywords - Domaini

    Zinc-fingerUniRule annotationSAAS annotation

    Phylogenomic databases

    GeneTreeiENSGT00740000114909.
    OMAiGHCLTGQ.
    OrthoDBiEOG79PJNW.
    TreeFamiTF319910.

    Family and domain databases

    Gene3Di1.10.565.10. 2 hits.
    3.30.50.10. 1 hit.
    InterProiIPR008946. Nucl_hormone_rcpt_ligand-bd.
    IPR000536. Nucl_hrmn_rcpt_lig-bd_core.
    IPR003079. ROR_rcpt.
    IPR001723. Str_hrmn_rcpt.
    IPR001628. Znf_hrmn_rcpt.
    IPR013088. Znf_NHR/GATA.
    [Graphical view]
    PfamiPF00104. Hormone_recep. 1 hit.
    PF00105. zf-C4. 1 hit.
    [Graphical view]
    PRINTSiPR01293. RORNUCRECPTR.
    PR00398. STRDHORMONER.
    PR00047. STROIDFINGER.
    SMARTiSM00430. HOLI. 1 hit.
    SM00399. ZnF_C4. 1 hit.
    [Graphical view]
    SUPFAMiSSF48508. SSF48508. 1 hit.
    PROSITEiPS00031. NUCLEAR_REC_DBD_1. 1 hit.
    PS51030. NUCLEAR_REC_DBD_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Fragment.

    F6UUA0-1 [UniParc]FASTAAdd to Basket

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    INSLLYSHST AQIEIIPCKI CGDKSSGIHY GVITCEGCKG FFRRSQQSNA    50
    TYSCPRQKNC LIDRTSRNRC QHCRLQKCLA VGMSRDAVKF GRMSKKQRDS 100
    LYAEVQKHRM QQQRDHQQPP GEAEPLNPAG YGLTPNGLTE LRDDLGGYME 150
    EESKNDSTVN SFYLDIQPSP DQSGLDVNGI KPEPLCDYTP ASSFFPYCSF 200
    TNGETSPTIS MAELEHLAQN ISKSHMETCQ YLREELQQLM WQTFLQEEID 250
    NYQSKQREVM WQLCAVKITE AIQYVVEFAK RIDGFMELCQ NDQIVLLKAG 300
    SLEVVFIRMC RAFDSQNNTV YFDGKYAGIE VFKALGCEDF ISFVFEFGKS 350
    LCSLHLTEDE IALFSAFVLM SGDRSWLQEK MKIEKLQQKI QLTLQHVLQK 400
    NHREDGILTK LICKVSTLRA LCGRHAEKLM AFKAIYPDIV RHHFPPLYKE 450
    LFTSEYEPAM QLEG 464
    Length:464
    Mass (Da):53,139
    Last modified:July 27, 2011 - v1
    Checksum:iFBD37A90C0C57344
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei1 – 11Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AAMC01070855 Genomic DNA. No translation available.
    AAMC01070856 Genomic DNA. No translation available.
    AAMC01070857 Genomic DNA. No translation available.
    AAMC01070858 Genomic DNA. No translation available.
    AAMC01070859 Genomic DNA. No translation available.
    AAMC01070860 Genomic DNA. No translation available.

    Genome annotation databases

    EnsembliENSXETT00000045670; ENSXETP00000045670; ENSXETG00000021123.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AAMC01070855 Genomic DNA. No translation available.
    AAMC01070856 Genomic DNA. No translation available.
    AAMC01070857 Genomic DNA. No translation available.
    AAMC01070858 Genomic DNA. No translation available.
    AAMC01070859 Genomic DNA. No translation available.
    AAMC01070860 Genomic DNA. No translation available.

    3D structure databases

    ProteinModelPortali F6UUA0.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSXETT00000045670 ; ENSXETP00000045670 ; ENSXETG00000021123 .

    Organism-specific databases

    Xenbasei XB-GENE-478535. rora.

    Phylogenomic databases

    GeneTreei ENSGT00740000114909.
    OMAi GHCLTGQ.
    OrthoDBi EOG79PJNW.
    TreeFami TF319910.

    Enzyme and pathway databases

    Reactomei REACT_210122. Nuclear Receptor transcription pathway.
    REACT_214942. RORA activates circadian gene expression.
    REACT_218703. Circadian Clock.
    REACT_221472. PPARA activates gene expression.
    REACT_225393. REV-ERBA represses gene expression.
    REACT_226491. BMAL1:CLOCK,NPAS2 activates circadian gene expression.

    Family and domain databases

    Gene3Di 1.10.565.10. 2 hits.
    3.30.50.10. 1 hit.
    InterProi IPR008946. Nucl_hormone_rcpt_ligand-bd.
    IPR000536. Nucl_hrmn_rcpt_lig-bd_core.
    IPR003079. ROR_rcpt.
    IPR001723. Str_hrmn_rcpt.
    IPR001628. Znf_hrmn_rcpt.
    IPR013088. Znf_NHR/GATA.
    [Graphical view ]
    Pfami PF00104. Hormone_recep. 1 hit.
    PF00105. zf-C4. 1 hit.
    [Graphical view ]
    PRINTSi PR01293. RORNUCRECPTR.
    PR00398. STRDHORMONER.
    PR00047. STROIDFINGER.
    SMARTi SM00430. HOLI. 1 hit.
    SM00399. ZnF_C4. 1 hit.
    [Graphical view ]
    SUPFAMi SSF48508. SSF48508. 1 hit.
    PROSITEi PS00031. NUCLEAR_REC_DBD_1. 1 hit.
    PS51030. NUCLEAR_REC_DBD_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    2. Ensembl
      Submitted (JUN-2011) to UniProtKB
      Cited for: IDENTIFICATION.

    Entry informationi

    Entry nameiF6UUA0_XENTR
    AccessioniPrimary (citable) accession number: F6UUA0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 27, 2011
    Last sequence update: July 27, 2011
    Last modified: October 1, 2014
    This is version 25 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3