F6TCC1 (F6TCC1_HORSE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Uncharacterized protein Ensembl ENSECAP00000006252

Gene names

Name:

GTF2H2 Ensembl ENSECAP00000006252

Organism

Equus caballus (Horse) [Reference proteome] Ensembl ENSECAP00000006252

Taxonomic identifier

9796 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Laurasiatheria › Perissodactyla › Equidae › Equus › Equus

Protein attributes

Sequence length	395 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSECAP00000006252

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	nucleotide-excision repair Inferred from electronic annotation. Source: InterPro transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro
Cellular_component	core TFIIH complex Inferred from electronic annotation. Source: InterPro
Molecular_function	zinc ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F6TCC1 [UniParc]. Last modified July 27, 2011. Version 1. Checksum: 3A73ADDA859A468C	FASTA	395	44,426
	10 20 30 40 50 60 MDEEPERTKR WEGGYERTWE ILKEDESGSL KATIEDILFK AKRKRVFEHH GQVRLGMMRH 70 80 90 100 110 120 LYVVVDGSRT MEDQDLKPNR LTCTLKLLEY FVEEYFDQNP ISQIGIIITK SKRAEKLTEL 130 140 150 160 170 180 SGNPRKHITS LKKAVAMTCH GEPSLYNSLS MAMQTLKHMP GHTSREVLII FSSLTTCDPS 190 200 210 220 230 240 DIYGLIQTLK AAKIRVSVIG LSAEVRVCTV LARETGGTYH VILDESHYKE LLTHHVSPPP 250 260 270 280 290 300 ASSNSECSLI RMGFPQHTIA SLSDQDAKPS FSMAHLDSSS EPGLTLGGYF CPQCRAKYCE 310 320 330 340 350 360 LPVECKICGL TLVSAPHLAR SYHHLFPLDA FQEIPLEEHN GERFCYGCQG ELKDQHVYIC 370 380 390 TVCRHVFCVD CDVFVHDSLH CCPGCVHTMP APASV

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Genome sequence, comparative analysis, and population genetics of the domestic horse." Broad Institute Genome Sequencing Platform, Broad Institute Whole Genome Assembly Team Wade C.M., Giulotto E., Sigurdsson S., Zoli M., Gnerre S., Imsland F., Lear T.L., Adelson D.L., Bailey E., Bellone R.R., Bloecker H., Distl O., Edgar R.C., Garber M., Leeb T., Mauceli E., MacLeod J.N., Penedo M.C.T. , Raison J.M., Sharpe T., Vogel J., Andersson L., Antczak D.F., Biagi T., Binns M.M., Chowdhary B.P., Coleman S.J., Della Valle G., Fryc S., Guerin G., Hasegawa T., Hill E.W., Jurka J., Kiialainen A., Lindgren G., Liu J., Magnani E., Mickelson J.R., Murray J., Nergadze S.G., Onofrio R., Pedroni S., Piras M.F., Raudsepp T., Rocchi M., Roeed K.H., Ryder O.A., Searle S., Skow L., Swinburne J.E., Syvaenen A.C., Tozaki T., Valberg S.J., Vaudin M., White J.R., Zody M.C., Lander E.S., Lindblad-Toh K. Science 326:865-867(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Thoroughbred Ensembl ENSECAP00000006252.
[2]	Ensembl Submitted (JUL-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: Thoroughbred Ensembl ENSECAP00000006252.

Cross-references

Sequence databases
RefSeq	XP_001504093.1. XM_001504043.3.
3D structure databases
ModBase	Search...
Proteomic databases
PRIDE	F6TCC1.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSECAT00000008360; ENSECAP00000006252; ENSECAG00000007814.
GeneID	100073305.
KEGG	ecb:100073305.
Organism-specific databases
CTD	2966.
Phylogenomic databases
GeneTree	ENSGT00490000043395.
KO	K03142.
OMA	ECKVCGL.
Family and domain databases
InterPro	IPR007198. Ssl1-like. IPR004595. TFIIH_C1-like_dom. IPR012170. TFIIH_SSL1/p44. IPR002035. VWF_A. IPR007087. Znf_C2H2. IPR001841. Znf_RING. [Graphical view]
PANTHER	PTHR12695. PTHR12695. 1 hit.
Pfam	PF07975. C1_4. 1 hit. PF04056. Ssl1. 1 hit. [Graphical view]
PIRSF	PIRSF015919. TFIIH_SSL1. 1 hit.
SMART	SM01047. C1_4. 1 hit. SM00327. VWA. 1 hit. [Graphical view]
TIGRFAMs	TIGR00622. ssl1. 1 hit.
PROSITE	PS50234. VWFA. 1 hit. PS50089. ZF_RING_2. 1 hit. PS00028. ZINC_FINGER_C2H2_1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F6TCC1_HORSE

Accession

Primary (citable) accession number: F6TCC1

Entry history

Integrated into UniProtKB/TrEMBL:	July 27, 2011
Last sequence update:	July 27, 2011
Last modified:	May 1, 2013
This is version 14 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)