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Protein
Submitted name:

Uncharacterized protein

Gene

gad1

Organism
Xenopus tropicalis (Western clawed frog) (Silurana tropicalis)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

  1. carboxy-lyase activity Source: InterPro
  2. pyridoxal phosphate binding Source: InterPro

GO - Biological processi

  1. carboxylic acid metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotation

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

ReactomeiREACT_272690. GABA synthesis, release, reuptake and degradation.
REACT_336068. GABA synthesis.

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:gad1Imported
OrganismiXenopus tropicalis (Western clawed frog) (Silurana tropicalis)Imported
Taxonomic identifieri8364 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusSilurana
ProteomesiUP000008143 Componenti: Unplaced

Expressioni

Gene expression databases

BgeeiF6T9C2.

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

GeneTreeiENSGT00760000119205.
InParanoidiF6T9C2.
OMAiEYLYTKI.
OrthoDBiEOG7H1JM3.
TreeFamiTF314688.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
IPR021115. Pyridoxal-P_BS.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
PROSITEiPS00392. DDC_GAD_HDC_YDC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F6T9C2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLRKENTLPM TCSHCNDVGF LQRNNSLDDK SRIVSSFKER QASKNLLVCE
60 70 80 90 100
NIEKDSQFRR AETDFSNLFA RDLLPAKNGE EFTMQFLLEV VDILLNYVRK
110 120 130 140 150
TFDRSTKVLD FHHPHQLLEG IEGFNLELSD NPESLEQILV DCRDTLKYGV
160 170 180 190 200
RTGHPRFFNQ LSTGLDIIGL AGEWLTSTAN TNMFTYEIAP VFVLMEQITL
210 220 230 240 250
RKMREIIGWT EKDGDGIFSP GGAISNMYSI MAARYKYFPE VKTKGMAAVP
260 270 280 290 300
RLVLFTSEHS HYSIKKTGAA LGFGSENVIM VKTNERGKII PADLEAKILE
310 320 330 340 350
AKQKGYVPLY VNATAGTTVY GAFDPISEIA DICEKYNLWL HVDAAWGGGL
360 370 380 390 400
LMSRRHRHKL DGIERANSVT WNPHKMMGVL LQCSAILLRE KGILQGCNQM
410 420 430 440 450
CAGYLFQQDK QYDISYDTGD KAIQCGRHVD IFKFWLMWKA KGTVGFEAQI
460 470 480 490 500
NKCLELAEYL YSKIYNREGF EMVFNGVPEH TNVCFWYIPP SLRGMPNNEE
510 520 530 540 550
KQEKLHRVAP KIKALMMESG TTMVGYQPQG DKANFFRMVI SNPAATKSDI
560
DFLVEEIERL GQEL
Length:564
Mass (Da):64,147
Last modified:July 27, 2011 - v1
Checksum:iA57FA26F453E2000
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAMC01035795 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSXETT00000040862; ENSXETP00000040862; ENSXETG00000018848.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAMC01035795 Genomic DNA. No translation available.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSXETT00000040862; ENSXETP00000040862; ENSXETG00000018848.

Phylogenomic databases

GeneTreeiENSGT00760000119205.
InParanoidiF6T9C2.
OMAiEYLYTKI.
OrthoDBiEOG7H1JM3.
TreeFamiTF314688.

Enzyme and pathway databases

ReactomeiREACT_272690. GABA synthesis, release, reuptake and degradation.
REACT_336068. GABA synthesis.

Gene expression databases

BgeeiF6T9C2.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
IPR021115. Pyridoxal-P_BS.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
PROSITEiPS00392. DDC_GAD_HDC_YDC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. Ensembl
    Submitted (MAY-2011) to UniProtKB
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiF6T9C2_XENTR
AccessioniPrimary (citable) accession number: F6T9C2
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: April 1, 2015
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.