F6SFI3 (F6SFI3_XENTR) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Uncharacterized protein Ensembl ENSXETP00000033990

Gene names

Name:

pdzd2 Ensembl ENSXETP00000033990

Organism

Xenopus tropicalis (Western clawed frog) (Silurana tropicalis) [Reference proteome] Ensembl ENSXETP00000033990

Taxonomic identifier

8364 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amphibia › Batrachia › Anura › Pipoidea › Pipidae › Xenopodinae › Xenopus › Silurana

Protein attributes

Sequence length	2646 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities	Contains 7 PDZ (DHR) domains. RuleBase RU003354
Caution	The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSXETP00000033990

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequences

	Sequence		Length	Mass (Da)
	F6SFI3 [UniParc]. Last modified July 27, 2011. Version 1. Checksum: BD231D71169175F8	FASTA	2,646	286,049
	10 20 30 40 50 60 MPITQENAAL YLALLHRWLQ DNVGGESEAP EKRLYLAAIR KLTQYIQFNF TLDESASKYS 70 80 90 100 110 120 QGALDMEICT VYLTKGDDDD SDVLGLSFGN IPIFGHGGEK RRGGKKRRVQ NGPVLDVGCI 130 140 150 160 170 180 WVTDLKRQSK AAKCGRMRLR DEVLSLNGQL MVGVDVTGAS YLAEQCWNGG FIYLIMLRRI 190 200 210 220 230 240 KRKAPLPPSH GSKSSASEPK AASSSHPSVR TTQNGKRTRK FGVISRTGKE SKDSEEAVQE 250 260 270 280 290 300 NGHYSPMEVD GSHSADEALG NDGDKQRTSR SSDADVQHGY QFPASYDEAP LTLSGNLWNL 310 320 330 340 350 360 CPSGKWGLQL IKCRLKNEGC CIWKMHMLKG ADGLGIQITG GRGSKRSPHG IVVAHVEEGG 370 380 390 400 410 420 SADRDGRLKA GDELLMINGQ SLVGLSHQEA VALLRSSMGI VQLVVASRES SNVDFCKYPS 430 440 450 460 470 480 TSLPDLVSAS SAQDVGASSD DKENEEPYVE EGQDYGTSPS HQAAESETDK FQEKGSSEVP 490 500 510 520 530 540 KGVCRSPTLG NSLLKYRSRS QGSGSRLESV GEDDELTVAN GDLYRDNGDK ISRGGRKHSL 550 560 570 580 590 600 PQQLDSVGSR QDYNIVKKTT RSLSTVQVES PWRLAQPSII SNIVLMKGQG KGLGFSIVGG 610 620 630 640 650 660 QDSARGRMGI FVKTIFSNGA AAADGRLKEG DEILEVNGES LQGLTHQEAI HKFKQLKKGV 670 680 690 700 710 720 VTLTVRTRLR SPSLTPCPTP TMMSRSSSPN SNISLGTSMP GSEDGDSTSG SRKGPGPKDR 730 740 750 760 770 780 IIMEVTLNKE PGVGLGIGAC CLTLENSSPG IYIHSLAPGS VAKMDGRLRI FSRGDQILEA 790 800 810 820 830 840 DSVSLRHAAL SEAYAILSEC GPGPVSLIIS RHPNPKVSEQ EMDEVITRTT HRESKDSFHS 850 860 870 880 890 900 MVSSKPNTIP ELDKQGSVSS EAELSQYFSQ DAPSHSSFSD TVATGSSDEE QLRPASGSNS 910 920 930 940 950 960 LDDNSAPPCA ANAKECGAKA ECCIPASHRN GNIPSPCNKH IVSTRQSSLN SSPQSIRSPL 970 980 990 1000 1010 1020 LRQRRIVSYE DEDGSEDGDI SRKDEGNYKD HLKKNADEDS GIVMSTLDVD EEIPDHNLPV 1030 1040 1050 1060 1070 1080 KCASEAGTSL CGSSVESEDS SVEHMVDSPF FAIKSFDYSA KADARPCSLA LKEPTEGPIE 1090 1100 1110 1120 1130 1140 NKRSPKLEHK AVTRVKSMMS IEYPSSPKPK AEESCLPSKS TKPLPLVKKP EGSEHSGKCI 1150 1160 1170 1180 1190 1200 TDTVQLFCSE YESVGLDLEI KESPLSVIIT GLRPAREGEK DSVGKLAAGD EIISINGIQV 1210 1220 1230 1240 1250 1260 SEMSYQQTCD FIQCLPSSVT LGVRKPLSGN GTMLPGSFLS DSGPVSLPHS APGKILVKGF 1270 1280 1290 1300 1310 1320 IHTDGFCALY ISSRCSAFEG ILNAPYKGPI PGQNCVVCLS HEDSHTVQKM YNLIHIDNKV 1330 1340 1350 1360 1370 1380 VPAFGFGWGN REMGRADVGL NGHGDTGLHV FLTAVDRLSH IIMASGGDQQ GPVEQVEILR 1390 1400 1410 1420 1430 1440 QENSQCKGPQ HTADCSTPAK VTIEAGNSLT IQCLEAGNDS TVTNIDDFIN ELDFSGAPSC 1450 1460 1470 1480 1490 1500 DFAKDSNTTE EMEACVASGQ GNRVDAETEE AKTELCSSIT NFDESTSQSE NILAFSVLDS 1510 1520 1530 1540 1550 1560 LSMEKKFAVD KSCLSSYSRN FSSLTEEDFS LSDQILSSSL DLPISMYVTA EDSDSESFLD 1570 1580 1590 1600 1610 1620 STSDMISSLQ NQSCMSELQT ATDSEEEQIE ICCDIKKGDS GAHQFYDVHQ LYPAATLSET 1630 1640 1650 1660 1670 1680 PKDLPDERCV DRVTVENIVN SGHPDASPTM SLLNNDSQEL PCRSEISLND YSALQVQDPM 1690 1700 1710 1720 1730 1740 TLGVKDNSTD VHNVGLVPLS EGNVYRCHLG PLDSGENMSA VEETIDSHVI PSCTIVDPSE 1750 1760 1770 1780 1790 1800 DEKCVTRSSM EPEVCPQEAS FANTNEGPIT NCTVSTSNVQ VKRETLPEGT TKKSPATRNC 1810 1820 1830 1840 1850 1860 NLDMYKPNVP LSKLHTDIKT TLKSSLDILN TQVSKPGPKL KGLSIKSKNK EQAQNHPAKA 1870 1880 1890 1900 1910 1920 DDFRKLSPQP SPKLLAKRAS MADGSTAARD RAVRSPVMTK KPEHKTGLSV QSVDSKASAN 1930 1940 1950 1960 1970 1980 VSANSSTCSS KNDKMSPFSR RTGKCANDKS KDEGFSLRVN SSECPNKTIT SSDSGTKELI 1990 2000 2010 2020 2030 2040 EDITAERVPQ QMATEGPETH DIRRTFIEVK LSSALPHALT SATRRQDGSD KANILTNDHF 2050 2060 2070 2080 2090 2100 ANVYMSPRIN NKSIVCKPVT RTYSMPAHLP IFMDDEGTQT KGQNHCLISQ GSVDCVLEKY 2110 2120 2130 2140 2150 2160 LHAGNNSPAV AQNQLKSKLP TQDGQVSNEK YVSRSEIMRS IRRNYYYELN WCHDPLSSLT 2170 2180 2190 2200 2210 2220 VKQRIKSFEN LAHFDKTVMK VIDMNHSPFS SKPPICRRSS GSVPSEGSLH DASRYLRRSL 2230 2240 2250 2260 2270 2280 SSCCDSHSEV TLAAPIETTP PSVALAVIEK SASDNITQTP VNEESRTEKK ESSPPAAQIR 2290 2300 2310 2320 2330 2340 KNKTSSSHIR PSLSRSKIRE LRALSMPDLD KLCTDDFTVE PKAPQFKTEL EIIPARLCDL 2350 2360 2370 2380 2390 2400 PGQNMEPASS NLSNTGLMGC SLSGTATDLD ESRPDGTLSR KSWAISLEQL MVSTQDQQNL 2410 2420 2430 2440 2450 2460 QAVLTSVSSR SDIISLIQEI KTQSEKREGV FFVVLNKEEG TGLGFSIAGG IDLEQKSVTV 2470 2480 2490 2500 2510 2520 HRVFAKAVAS QDTMIEKGDG ILSINGCSLQ GAAHGYALNA LHGAKPHRQA VVVIQKERDG 2530 2540 2550 2560 2570 2580 EKLSRLDASR GRHTTSGKDV SMTALAGGSV DLTDTMCVEL NKTSAGLGFS LDGGKASIYG 2590 2600 2610 2620 2630 2640 DRPLFIKRIF KGGAAEQAGK IQAGDEIIAI GGKYLTGLMH YDAWNIIKAV PEGPVQLLIR KHRTAV

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The genome of the Western clawed frog Xenopus tropicalis." Hellsten U., Harland R.M., Gilchrist M.J., Hendrix D., Jurka J., Kapitonov V., Ovcharenko I., Putnam N.H., Shu S., Taher L., Blitz I.L., Blumberg B., Dichmann D.S., Dubchak I., Amaya E., Detter J.C., Fletcher R., Gerhard D.S. , Goodstein D., Graves T., Grigoriev I.V., Grimwood J., Kawashima T., Lindquist E., Lucas S.M., Mead P.E., Mitros T., Ogino H., Ohta Y., Poliakov A.V., Pollet N., Robert J., Salamov A., Sater A.K., Schmutz J., Terry A., Vize P.D., Warren W.C., Wells D., Wills A., Wilson R.K., Zimmerman L.B., Zorn A.M., Grainger R., Grammer T., Khokha M.K., Richardson P.M., Rokhsar D.S. Science 328:633-636(2010) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[2]	Ensembl Submitted (JUN-2011) to UniProtKB Cited for: IDENTIFICATION.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AAMC01060762 Genomic DNA. No translation available. AAMC01060763 Genomic DNA. No translation available. AAMC01060764 Genomic DNA. No translation available. AAMC01060765 Genomic DNA. No translation available. AAMC01060766 Genomic DNA. No translation available. AAMC01060767 Genomic DNA. No translation available. AAMC01060768 Genomic DNA. No translation available. AAMC01060769 Genomic DNA. No translation available.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSXETT00000033990; ENSXETP00000033990; ENSXETG00000015574.
Organism-specific databases
Xenbase	XB-GENE-6044665. pdzd2.
Phylogenomic databases
GeneTree	ENSGT00700000104234.
OMA	QNWPHES.
Family and domain databases
InterPro	IPR001478. PDZ. [Graphical view]
Pfam	PF00595. PDZ. 4 hits. [Graphical view]
SMART	SM00228. PDZ. 7 hits. [Graphical view]
SUPFAM	SSF50156. PDZ. 7 hits.
PROSITE	PS50106. PDZ. 6 hits. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F6SFI3_XENTR

Accession

Primary (citable) accession number: F6SFI3

Entry history

Integrated into UniProtKB/TrEMBL:	July 27, 2011
Last sequence update:	July 27, 2011
Last modified:	March 6, 2013
This is version 10 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)