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Protein
Submitted name:

Spliceosome RNA helicase DDX39B

Gene

DDX39B

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Spliceosome RNA helicase DDX39BImported
Gene namesi
Name:DDX39BImported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 6

Organism-specific databases

HGNCiHGNC:13917. DDX39B.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Proteomic databases

PeptideAtlasiF6S2B7.
PRIDEiF6S2B7.

Expressioni

Gene expression databases

BgeeiENSG00000198563.

Interactioni

Protein-protein interaction databases

STRINGi9606.ENSP00000379475.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini45 – 7329Q_MOTIFInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG0329. Eukaryota.
COG0513. LUCA.
GeneTreeiENSGT00830000128348.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR011545. DEAD/DEAH_box_helicase_dom.
IPR027417. P-loop_NTPase.
IPR014014. RNA_helicase_DEAD_Q_motif.
[Graphical view]
PfamiPF00270. DEAD. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
PROSITEiPS51195. Q_MOTIF. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

F6S2B7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAENDVDNEL LDYEDDEVET AAGGDGAEAP AKKDVKGSYV SIHSSGFRDF
60 70 80 90 100
LLKPELLRAI VDCGFEHPSE VQHECIPQAI LGMDVLCQAK SGMGKTAVFV
110 120 130
LATLQQLEPV TGQVCFCDSH FPRGDNEELH LP
Length:132
Mass (Da):14,348
Last modified:July 27, 2011 - v1
Checksum:iDDA2DD95971EE82F
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei132 – 1321Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL662801 Genomic DNA. No translation available.
AL662847 Genomic DNA. No translation available.
BX001040 Genomic DNA. No translation available.
BX248516 Genomic DNA. No translation available.
BX927320 Genomic DNA. No translation available.
CR753820 Genomic DNA. No translation available.
CR753864 Genomic DNA. No translation available.
CR753892 Genomic DNA. No translation available.
CR942185 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENST00000415036; ENSP00000402876; ENSG00000225073.
ENST00000417491; ENSP00000408067; ENSG00000230624.
ENST00000419020; ENSP00000405245; ENSG00000198563.
ENST00000439857; ENSP00000398274; ENSG00000225859.
ENST00000449010; ENSP00000406006; ENSG00000235439.
ENST00000452163; ENSP00000395105; ENSG00000229496.
ENST00000452414; ENSP00000411371; ENSG00000215425.
UCSCiuc063nbk.1. human.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL662801 Genomic DNA. No translation available.
AL662847 Genomic DNA. No translation available.
BX001040 Genomic DNA. No translation available.
BX248516 Genomic DNA. No translation available.
BX927320 Genomic DNA. No translation available.
CR753820 Genomic DNA. No translation available.
CR753864 Genomic DNA. No translation available.
CR753892 Genomic DNA. No translation available.
CR942185 Genomic DNA. No translation available.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9606.ENSP00000379475.

Proteomic databases

PeptideAtlasiF6S2B7.
PRIDEiF6S2B7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000415036; ENSP00000402876; ENSG00000225073.
ENST00000417491; ENSP00000408067; ENSG00000230624.
ENST00000419020; ENSP00000405245; ENSG00000198563.
ENST00000439857; ENSP00000398274; ENSG00000225859.
ENST00000449010; ENSP00000406006; ENSG00000235439.
ENST00000452163; ENSP00000395105; ENSG00000229496.
ENST00000452414; ENSP00000411371; ENSG00000215425.
UCSCiuc063nbk.1. human.

Organism-specific databases

HGNCiHGNC:13917. DDX39B.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiKOG0329. Eukaryota.
COG0513. LUCA.
GeneTreeiENSGT00830000128348.

Miscellaneous databases

ChiTaRSiDDX39B. human.

Gene expression databases

BgeeiENSG00000198563.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR011545. DEAD/DEAH_box_helicase_dom.
IPR027417. P-loop_NTPase.
IPR014014. RNA_helicase_DEAD_Q_motif.
[Graphical view]
PfamiPF00270. DEAD. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
PROSITEiPS51195. Q_MOTIF. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiF6S2B7_HUMAN
AccessioniPrimary (citable) accession number: F6S2B7
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: September 7, 2016
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.