F6RIS8 (F6RIS8_MOUSE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Collagen alpha-3(IV) chain Ensembl ENSMUSP00000119094

Gene names

Name:

Col4a3 Ensembl ENSMUSP00000119094 MGI 104688

Organism

Mus musculus (Mouse) [Reference proteome] Ensembl ENSMUSP00000119094

Taxonomic identifier

10090 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus

Protein attributes

Sequence length	197 AA.
Sequence status	Fragment.
Protein existence	Evidence at transcript level

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSMUSP00000119094

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Cellular_component	collagen type IV Inferred from direct assay PubMed 12101409. Source: MGI
Molecular_function	extracellular matrix structural constituent Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	1	1	Ensembl ENSMUSP00000119094

Sequences

	Sequence		Length	Mass (Da)
	F6RIS8 [UniParc]. Last modified July 27, 2011. Version 1. Checksum: 0EEA01E6BA6E5AAC	FASTA	197	22,381
	10 20 30 40 50 60 ATGTRMRGFI FTRHSQTTAI PSCPEGTQPL YSGFSLLFVQ GNKRAHGQDL GTLGSCLQRF 70 80 90 100 110 120 TTMPFLFCNI NNVCNFASRN DYSYWLSTPA LMPMDMAPIS GRALEPYISR CTVCEGPAMA 130 140 150 160 170 180 IAVHSQTTAI PPCPQDWVSL WKGFSFIMKT YSINCESWRL RENHKPLSGV HEEKTLTKSK 190 KPEPFFFFFF FFLFLLK

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Lineage-specific biology revealed by a finished genome assembly of the mouse." Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. , Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., Eichler E.E., Ponting C.P. PLoS Biol. 7:E1000112-E1000112(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: C57BL/6J Ensembl ENSMUSP00000119094.
[2]	Ensembl Submitted (JUN-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: C57BL/6J Ensembl ENSMUSP00000119094.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AC123746 Genomic DNA. No translation available. AC138214 Genomic DNA. No translation available.
IPI	IPI00831319.
3D structure databases
ProteinModelPortal	F6RIS8.
SMR	F6RIS8. Positions 8-150.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSMUST00000152664; ENSMUSP00000119094; ENSMUSG00000079465.
Organism-specific databases
MGI	MGI:104688. Col4a3.
Phylogenomic databases
GeneTree	ENSGT00690000101772.
Gene expression databases
ArrayExpress	F6RIS8.
Bgee	F6RIS8.
Family and domain databases
Gene3D	2.170.240.10. 1 hit.
InterPro	IPR016187. C-type_lectin_fold. IPR001442. Collagen_VI_NC. [Graphical view]
Pfam	PF01413. C4. 2 hits. [Graphical view]
SMART	SM00111. C4. 1 hit. [Graphical view]
SUPFAM	SSF56436. C-type_lectin_fold. 2 hits.
PROSITE	PS51403. NC1_IV. 1 hit. [Graphical view]
ProtoNet	Search...
Other
ChiTaRS	COL4A3. mouse.
NextBio	35556745.
SOURCE	Search...

Entry information

Entry name

F6RIS8_MOUSE

Accession

Primary (citable) accession number: F6RIS8

Entry history

Integrated into UniProtKB/TrEMBL:	July 27, 2011
Last sequence update:	July 27, 2011
Last modified:	April 3, 2013
This is version 17 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)