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F6RIS8

- F6RIS8_MOUSE

UniProt

F6RIS8 - F6RIS8_MOUSE

Protein
Submitted name:

Collagen alpha-3(IV) chain

Gene

Col4a3

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 26 (01 Oct 2014)
      Sequence version 1 (27 Jul 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. extracellular matrix structural constituent Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Collagen alpha-3(IV) chainImported
    Gene namesi
    Name:Col4a3Imported
    OrganismiMus musculus (Mouse)Imported
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 1

    Organism-specific databases

    MGIiMGI:104688. Col4a3.

    Subcellular locationi

    GO - Cellular componenti

    1. basement membrane Source: MGI
    2. collagen type IV trimer Source: MGI

    Expressioni

    Gene expression databases

    ArrayExpressiF6RIS8.
    BgeeiF6RIS8.

    Structurei

    3D structure databases

    ProteinModelPortaliF6RIS8.
    SMRiF6RIS8. Positions 8-150.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00720000108691.

    Family and domain databases

    Gene3Di2.170.240.10. 1 hit.
    InterProiIPR016187. C-type_lectin_fold.
    IPR001442. Collagen_VI_NC.
    [Graphical view]
    PfamiPF01413. C4. 2 hits.
    [Graphical view]
    SMARTiSM00111. C4. 1 hit.
    [Graphical view]
    SUPFAMiSSF56436. SSF56436. 2 hits.
    PROSITEiPS51403. NC1_IV. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Fragment.

    F6RIS8-1 [UniParc]FASTAAdd to Basket

    « Hide

    ATGTRMRGFI FTRHSQTTAI PSCPEGTQPL YSGFSLLFVQ GNKRAHGQDL    50
    GTLGSCLQRF TTMPFLFCNI NNVCNFASRN DYSYWLSTPA LMPMDMAPIS 100
    GRALEPYISR CTVCEGPAMA IAVHSQTTAI PPCPQDWVSL WKGFSFIMKT 150
    YSINCESWRL RENHKPLSGV HEEKTLTKSK KPEPFFFFFF FFLFLLK 197
    Length:197
    Mass (Da):22,381
    Last modified:July 27, 2011 - v1
    Checksum:i0EEA01E6BA6E5AAC
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei1 – 11Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC123746 Genomic DNA. No translation available.
    AC138214 Genomic DNA. No translation available.

    Genome annotation databases

    EnsembliENSMUST00000152664; ENSMUSP00000119094; ENSMUSG00000079465.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC123746 Genomic DNA. No translation available.
    AC138214 Genomic DNA. No translation available.

    3D structure databases

    ProteinModelPortali F6RIS8.
    SMRi F6RIS8. Positions 8-150.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000152664 ; ENSMUSP00000119094 ; ENSMUSG00000079465 .

    Organism-specific databases

    MGIi MGI:104688. Col4a3.

    Phylogenomic databases

    GeneTreei ENSGT00720000108691.

    Miscellaneous databases

    ChiTaRSi COL4A3. mouse.
    NextBioi 35556745.
    SOURCEi Search...

    Gene expression databases

    ArrayExpressi F6RIS8.
    Bgeei F6RIS8.

    Family and domain databases

    Gene3Di 2.170.240.10. 1 hit.
    InterProi IPR016187. C-type_lectin_fold.
    IPR001442. Collagen_VI_NC.
    [Graphical view ]
    Pfami PF01413. C4. 2 hits.
    [Graphical view ]
    SMARTi SM00111. C4. 1 hit.
    [Graphical view ]
    SUPFAMi SSF56436. SSF56436. 2 hits.
    PROSITEi PS51403. NC1_IV. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: C57BL/6JImported.
    2. Ensembl
      Submitted (JUN-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: C57BL/6JImported.

    Entry informationi

    Entry nameiF6RIS8_MOUSE
    AccessioniPrimary (citable) accession number: F6RIS8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 27, 2011
    Last sequence update: July 27, 2011
    Last modified: October 1, 2014
    This is version 26 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3