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Protein
Submitted name:

Spliceosome RNA helicase DDX39B

Gene

DDX39B

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Names & Taxonomyi

Protein namesi
Submitted name:
Spliceosome RNA helicase DDX39BImported
Gene namesi
Name:DDX39BImported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 6

Organism-specific databases

EuPathDBiHostDB:ENSG00000198563.13
HGNCiHGNC:13917 DDX39B

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Pathology & Biotechi

Organism-specific databases

OpenTargetsiENSG00000198563

PTM / Processingi

Proteomic databases

PeptideAtlasiF6R6M7

Expressioni

Gene expression databases

BgeeiENSG00000198563

Structurei

3D structure databases

SMRiF6R6M7
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini45 – 73Q_MOTIFInterPro annotationAdd BLAST29
Domaini76 – 197Helicase ATP-bindingInterPro annotationAdd BLAST122

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi45 – 73Q motifPROSITE-ProRule annotationAdd BLAST29

Phylogenomic databases

GeneTreeiENSGT00830000128348

Family and domain databases

InterProiView protein in InterPro
IPR011545 DEAD/DEAH_box_helicase_dom
IPR014001 Helicase_ATP-bd
IPR027417 P-loop_NTPase
IPR014014 RNA_helicase_DEAD_Q_motif
PfamiView protein in Pfam
PF00270 DEAD, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
PROSITEiView protein in PROSITE
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51195 Q_MOTIF, 1 hit

Sequencei

Sequence statusi: Fragment.

F6R6M7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAENDVDNEL LDYEDDEVET AAGGDGAEAP AKKDVKGSYV SIHSSGFRDF
60 70 80 90 100
LLKPELLRAI VDCGFEHPSE VQHECIPQAI LGMDVLCQAK SGMGKTAVFV
110 120 130 140 150
LATLQQLEPV TGQVCFCDSH FPRGDNEELH LPYVSVYFLP KVSVLVMCHT
160 170 180 190
RELAFQISKE YERFSKYMPN VKVAVFFGGL SIKKDEEVLK KNCPHIV
Length:197
Mass (Da):21,915
Last modified:July 27, 2011 - v1
Checksum:i5D2DB69406622E9D
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei197Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL662801 Genomic DNA No translation available.
AL662847 Genomic DNA No translation available.
BX001040 Genomic DNA No translation available.
BX248516 Genomic DNA No translation available.
BX927320 Genomic DNA No translation available.
CR753820 Genomic DNA No translation available.
CR753864 Genomic DNA No translation available.
CR753892 Genomic DNA No translation available.
CR942185 Genomic DNA No translation available.

Genome annotation databases

EnsembliENST00000416183; ENSP00000405964; ENSG00000229496
ENST00000428291; ENSP00000388382; ENSG00000235439
ENST00000428450; ENSP00000405707; ENSG00000198563
ENST00000432433; ENSP00000408609; ENSG00000225859
ENST00000432466; ENSP00000409810; ENSG00000215425
ENST00000433291; ENSP00000408191; ENSG00000230624
ENST00000442717; ENSP00000409162; ENSG00000225073
UCSCiuc063nbg.1 human

Similar proteinsi

Entry informationi

Entry nameiF6R6M7_HUMAN
AccessioniPrimary (citable) accession number: F6R6M7
Entry historyiIntegrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: April 25, 2018
This is version 66 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
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Main funding by: National Institutes of Health