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Protein

C-C motif chemokine

Gene

Ccl17

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 4 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

  • CCR chemokine receptor binding Source: GO_Central
  • chemokine activity Source: MGI
  • cytokine activity Source: MGI

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

CytokineUniRule annotationSAAS annotation

Keywords - Biological processi

ChemotaxisUniRule annotation

Enzyme and pathway databases

ReactomeiR-MMU-380108. Chemokine receptors bind chemokines.

Names & Taxonomyi

Protein namesi
Recommended name:
C-C motif chemokineUniRule annotation
Gene namesi
Name:Ccl17Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 8

Organism-specific databases

MGIiMGI:1329039. Ccl17.

Subcellular locationi

  • Secreted UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

SecretedUniRule annotation

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 3333UniRule annotationAdd
BLAST
Chaini34 – 10370C-C motif chemokineUniRule annotationPRO_5005129866Add
BLAST

Proteomic databases

PaxDbiF6R5P4.

Expressioni

Gene expression databases

BgeeiF6R5P4.

Interactioni

GO - Molecular functioni

  • CCR chemokine receptor binding Source: GO_Central
  • chemokine activity Source: MGI
  • cytokine activity Source: MGI

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000034232.

Structurei

3D structure databases

ProteinModelPortaliF6R5P4.
SMRiF6R5P4. Positions 37-100.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini40 – 9859SCYInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the intercrine beta (chemokine CC) family.UniRule annotationSAAS annotation

Keywords - Domaini

SignalUniRule annotation

Phylogenomic databases

eggNOGiENOG410J0QF. Eukaryota.
ENOG41113EM. LUCA.
GeneTreeiENSGT00530000064258.
InParanoidiF6R5P4.
KOiK05514.
OMAiCSDPKDT.
OrthoDBiEOG7K0ZFZ.
TreeFamiTF334888.

Family and domain databases

InterProiIPR000827. Chemokine_CC_CS.
IPR001811. Chemokine_IL8-like_dom.
[Graphical view]
PfamiPF00048. IL8. 1 hit.
[Graphical view]
SMARTiSM00199. SCY. 1 hit.
[Graphical view]
SUPFAMiSSF54117. SSF54117. 1 hit.
PROSITEiPS00472. SMALL_CYTOKINES_CC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F6R5P4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKTFTSAFGT MRSLQMLLLA ALLLGTFLQH ARAARATNVG RECCLDYFKG
60 70 80 90 100
AIPIRKLVSW YKTSVECSRD AIVFLTVQGK LICADPKDKH VKKAIRLVKN

PRP
Length:103
Mass (Da):11,539
Last modified:October 3, 2012 - v2
Checksum:i0E712E12F07A1EF0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC129606 Genomic DNA. No translation available.
RefSeqiNP_035462.2. NM_011332.3.
XP_006530845.1. XM_006530782.2.
XP_006530846.1. XM_006530783.2.
XP_011246633.1. XM_011248331.1.
UniGeneiMm.41988.

Genome annotation databases

EnsembliENSMUST00000034232; ENSMUSP00000034232; ENSMUSG00000031780.
GeneIDi20295.
KEGGimmu:20295.
UCSCiuc009mwz.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC129606 Genomic DNA. No translation available.
RefSeqiNP_035462.2. NM_011332.3.
XP_006530845.1. XM_006530782.2.
XP_006530846.1. XM_006530783.2.
XP_011246633.1. XM_011248331.1.
UniGeneiMm.41988.

3D structure databases

ProteinModelPortaliF6R5P4.
SMRiF6R5P4. Positions 37-100.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000034232.

Proteomic databases

PaxDbiF6R5P4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000034232; ENSMUSP00000034232; ENSMUSG00000031780.
GeneIDi20295.
KEGGimmu:20295.
UCSCiuc009mwz.2. mouse.

Organism-specific databases

CTDi6361.
MGIiMGI:1329039. Ccl17.

Phylogenomic databases

eggNOGiENOG410J0QF. Eukaryota.
ENOG41113EM. LUCA.
GeneTreeiENSGT00530000064258.
InParanoidiF6R5P4.
KOiK05514.
OMAiCSDPKDT.
OrthoDBiEOG7K0ZFZ.
TreeFamiTF334888.

Enzyme and pathway databases

ReactomeiR-MMU-380108. Chemokine receptors bind chemokines.

Miscellaneous databases

SOURCEiSearch...

Gene expression databases

BgeeiF6R5P4.

Family and domain databases

InterProiIPR000827. Chemokine_CC_CS.
IPR001811. Chemokine_IL8-like_dom.
[Graphical view]
PfamiPF00048. IL8. 1 hit.
[Graphical view]
SMARTiSM00199. SCY. 1 hit.
[Graphical view]
SUPFAMiSSF54117. SSF54117. 1 hit.
PROSITEiPS00472. SMALL_CYTOKINES_CC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  2. Ensembl
    Submitted (JUN-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiF6R5P4_MOUSE
AccessioniPrimary (citable) accession number: F6R5P4
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: October 3, 2012
Last modified: July 6, 2016
This is version 41 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.