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Protein
Submitted name:

T brachyury transcription factor

Gene

t

Organism
Xenopus tropicalis (Western clawed frog) (Silurana tropicalis)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processTranscription, Transcription regulationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
T brachyury transcription factorImported
Gene namesi
Name:tImported
OrganismiXenopus tropicalis (Western clawed frog) (Silurana tropicalis)Imported
Taxonomic identifieri8364 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusSilurana
Proteomesi
  • UP000008143 Componenti: Unassembled WGS sequence

Organism-specific databases

XenbaseiXB-GENE-478789. t.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

PTM / Processingi

Proteomic databases

PaxDbiF6QE63.

Expressioni

Gene expression databases

BgeeiENSXETG00000005370.

Interactioni

Protein-protein interaction databases

STRINGi8364.ENSXETP00000011786.

Family & Domainsi

Phylogenomic databases

eggNOGiKOG3585. Eukaryota.
ENOG410XSTS. LUCA.
GeneTreeiENSGT00760000118897.
InParanoidiF6QE63.
OMAiAPSCVYI.
OrthoDBiEOG091G05OC.
TreeFamiTF106341.

Family and domain databases

CDDicd00182. TBOX. 1 hit.
Gene3Di2.60.40.820. 1 hit.
InterProiView protein in InterPro
IPR008967. p53-like_TF_DNA-bd.
IPR002070. TF_Brachyury.
IPR001699. TF_T-box.
IPR018186. TF_T-box_CS.
PANTHERiPTHR11267. PTHR11267. 1 hit.
PfamiView protein in Pfam
PF00907. T-box. 1 hit.
PRINTSiPR00938. BRACHYURY.
PR00937. TBOX.
SMARTiView protein in SMART
SM00425. TBOX. 1 hit.
SUPFAMiSSF49417. SSF49417. 1 hit.
PROSITEiView protein in PROSITE
PS01283. TBOX_1. 1 hit.
PS01264. TBOX_2. 1 hit.
PS50252. TBOX_3. 1 hit.

Sequencei

Sequence statusi: Complete.

F6QE63-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSVSATESCA KNVQYRVDHL LSAVENELQA GSEKGDPTEK ELKVSLEERD
60 70 80 90 100
LWMRFKELTN EMIVTKNGRR MFPVLKVSVS GLDPNAMYTF LLDFVAADNH
110 120 130 140 150
RWKYVNGEWV PGGKPEPQAP SCVYIHPDSP NFGAHWMKDP VSFSKVKLTN
160 170 180 190 200
KMNGGGQIML NSLHKYEPRI HIVRVGGTQR MITSHSFPET QFIAVTAYQN
210 220 230 240 250
EEITALKIKH NPFAKAFLDA KERNDYKDIL DEGIDSQHSN FSQLGTWLIP
260 270 280 290 300
NGGSLCSPNP HTQFGAPISL SSPHGCERYS SLRNHRSAPY PSPYVHRNNS
310 320 330 340 350
PNNLADNSSA CLSMLQSHDN WSTLQMPAHT GVLPMSHSAG TPPTSSQYPS
360 370 380 390 400
LWSVSNSTLT PVSQSGGITN GISSQYLRGS TPHYSSLSHA VPSPATGSPL
410 420 430
YEHGSQTEIA ENQYDVTAHS RLSSTWTTVA PPSI
Length:434
Mass (Da):47,863
Last modified:July 27, 2011 - v1
Checksum:iBA9A9235EBB9CD4A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAMC01087202 Genomic DNA. No translation available.
UniGeneiStr.55517.

Genome annotation databases

EnsembliENSXETT00000011786; ENSXETP00000011786; ENSXETG00000005370.

Similar proteinsi

Entry informationi

Entry nameiF6QE63_XENTR
AccessioniPrimary (citable) accession number: F6QE63
Entry historyiIntegrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: August 30, 2017
This is version 44 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

Lacks conserved residue(s) required for the propagation of feature annotation.PROSITE-ProRule annotation
The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported