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F6QDH8

- F6QDH8_HORSE

UniProt

F6QDH8 - F6QDH8_HORSE

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Protein
Alpha-amylase
Gene
LOC100051073
Organism
Equus caballus (Horse)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotationSAAS annotations

GO - Molecular functioni

  1. cation binding Source: InterPro
  2. hydrolase activity, acting on glycosyl bonds Source: UniProtKB-KW
Complete GO annotation...

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotation, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
Gene namesi
Name:LOC100051073Imported
OrganismiEquus caballus (Horse)Imported
Taxonomic identifieri9796 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaPerissodactylaEquidaeEquus
ProteomesiUP000002281: Chromosome 5

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Phylogenomic databases

GeneTreeiENSGT00390000002882.
KOiK01176.
OMAiSNTYITA.
OrthoDBiEOG7RJPR2.
TreeFamiTF312850.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR006048. A-amylase_b_C.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
SM00632. Aamy_C. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

F6QDH8-1 [UniParc]FASTAAdd to Basket

« Hide

MKFLLLLSAI GFCWAQYDPH TQSGRTSIVH LFEWRWADIA LECERYLAPK    50
GFGGVQVSPP NENIVVNNPP RPWWERYQPI SYKLCTRSGS ESEFRDMVTR 100
CNNVGVRIYV DAVVNHMCGS GGGAGTSSTC GSYYNAGSRD FPAVPYSGWD 150
FNDGKCNTGS GEVENYNDIY QVRDCRVVGL LDLALEKDYV RSTIAAYLNR 200
LIDIGVAGFR LDAAKHMWPG DIKAFLDKLH NLNTKWFPQG SKPFIYQEVI 250
DLGTEPIKGS EYFGNGRVTE FKYGAKLGTV LRRWNGEKMA YLKNWGEGWG 300
FMPSDRALVF VDNHDNQRGH GAGGASILTF WDSRLYKMAV GFMLAHPYGF 350
TRIMSSYRWA RNFQNGKDVN DWIGPPNNNG VIKEVTINPD TTCGNDWVCE 400
HRWRQIRNMV AFRNVVNGQP FTNWWDNGSN QVAFGRGNRG FIVFNNDDWA 450
LSSTLQTGLP GGTYCDVISG DKINGNCTGI KINVSSDGKA YFSISNTAED 500
PFIAIHAESK L 511
Length:511
Mass (Da):57,352
Last modified:July 27, 2011 - v1
Checksum:iE87592F95A38EE57
GO

Sequence databases

RefSeqiXP_001491778.1. XM_001491728.2.

Genome annotation databases

EnsembliENSECAT00000010797; ENSECAP00000008369; ENSECAG00000010221.
GeneIDi100051073.
KEGGiecb:100051073.

Cross-referencesi

Sequence databases

RefSeqi XP_001491778.1. XM_001491728.2.

3D structure databases

ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSECAT00000010797 ; ENSECAP00000008369 ; ENSECAG00000010221 .
GeneIDi 100051073.
KEGGi ecb:100051073.

Phylogenomic databases

GeneTreei ENSGT00390000002882.
KOi K01176.
OMAi SNTYITA.
OrthoDBi EOG7RJPR2.
TreeFami TF312850.

Family and domain databases

Gene3Di 2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProi IPR006048. A-amylase_b_C.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
[Graphical view ]
PRINTSi PR00110. ALPHAAMYLASE.
SMARTi SM00642. Aamy. 1 hit.
SM00632. Aamy_C. 1 hit.
[Graphical view ]
SUPFAMi SSF51445. SSF51445. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence, comparative analysis, and population genetics of the domestic horse."
    Broad Institute Genome Sequencing Platform, Broad Institute Whole Genome Assembly Team
    Wade C.M., Giulotto E., Sigurdsson S., Zoli M., Gnerre S., Imsland F., Lear T.L., Adelson D.L., Bailey E., Bellone R.R., Bloecker H., Distl O., Edgar R.C., Garber M., Leeb T., Mauceli E., MacLeod J.N., Penedo M.C.T.
    , Raison J.M., Sharpe T., Vogel J., Andersson L., Antczak D.F., Biagi T., Binns M.M., Chowdhary B.P., Coleman S.J., Della Valle G., Fryc S., Guerin G., Hasegawa T., Hill E.W., Jurka J., Kiialainen A., Lindgren G., Liu J., Magnani E., Mickelson J.R., Murray J., Nergadze S.G., Onofrio R., Pedroni S., Piras M.F., Raudsepp T., Rocchi M., Roeed K.H., Ryder O.A., Searle S., Skow L., Swinburne J.E., Syvaenen A.C., Tozaki T., Valberg S.J., Vaudin M., White J.R., Zody M.C., Lander E.S., Lindblad-Toh K.
    Science 326:865-867(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ThoroughbredImported.
  2. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: ThoroughbredImported.

Entry informationi

Entry nameiF6QDH8_HORSE
AccessioniPrimary (citable) accession number: F6QDH8
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: July 9, 2014
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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