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F6QDH8

- F6QDH8_HORSE

UniProt

F6QDH8 - F6QDH8_HORSE

Protein

Alpha-amylase

Gene

LOC100051073

Organism
Equus caballus (Horse)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 19 (01 Oct 2014)
      Sequence version 1 (27 Jul 2011)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotationSAAS annotation

    GO - Molecular functioni

    1. alpha-amylase activity Source: UniProtKB-EC
    2. cation binding Source: InterPro

    GO - Biological processi

    1. carbohydrate metabolic process Source: UniProtKB-KW

    Keywords - Molecular functioni

    GlycosidaseUniRule annotation, Hydrolase

    Keywords - Biological processi

    Carbohydrate metabolismUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
    Gene namesi
    Name:LOC100051073Imported
    OrganismiEquus caballus (Horse)Imported
    Taxonomic identifieri9796 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaPerissodactylaEquidaeEquus
    ProteomesiUP000002281: Chromosome 5

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the glycosyl hydrolase 13 family.UniRule annotation

    Phylogenomic databases

    GeneTreeiENSGT00390000002882.
    KOiK01176.
    OMAiSNTYITA.
    OrthoDBiEOG7RJPR2.
    TreeFamiTF312850.

    Family and domain databases

    Gene3Di2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    InterProiIPR006048. A-amylase_b_C.
    IPR006046. Alpha_amylase.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    PF02806. Alpha-amylase_C. 1 hit.
    [Graphical view]
    PRINTSiPR00110. ALPHAAMYLASE.
    SMARTiSM00642. Aamy. 1 hit.
    SM00632. Aamy_C. 1 hit.
    [Graphical view]
    SUPFAMiSSF51445. SSF51445. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    F6QDH8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKFLLLLSAI GFCWAQYDPH TQSGRTSIVH LFEWRWADIA LECERYLAPK    50
    GFGGVQVSPP NENIVVNNPP RPWWERYQPI SYKLCTRSGS ESEFRDMVTR 100
    CNNVGVRIYV DAVVNHMCGS GGGAGTSSTC GSYYNAGSRD FPAVPYSGWD 150
    FNDGKCNTGS GEVENYNDIY QVRDCRVVGL LDLALEKDYV RSTIAAYLNR 200
    LIDIGVAGFR LDAAKHMWPG DIKAFLDKLH NLNTKWFPQG SKPFIYQEVI 250
    DLGTEPIKGS EYFGNGRVTE FKYGAKLGTV LRRWNGEKMA YLKNWGEGWG 300
    FMPSDRALVF VDNHDNQRGH GAGGASILTF WDSRLYKMAV GFMLAHPYGF 350
    TRIMSSYRWA RNFQNGKDVN DWIGPPNNNG VIKEVTINPD TTCGNDWVCE 400
    HRWRQIRNMV AFRNVVNGQP FTNWWDNGSN QVAFGRGNRG FIVFNNDDWA 450
    LSSTLQTGLP GGTYCDVISG DKINGNCTGI KINVSSDGKA YFSISNTAED 500
    PFIAIHAESK L 511
    Length:511
    Mass (Da):57,352
    Last modified:July 27, 2011 - v1
    Checksum:iE87592F95A38EE57
    GO

    Sequence databases

    RefSeqiXP_001491778.1. XM_001491728.2.

    Genome annotation databases

    EnsembliENSECAT00000010797; ENSECAP00000008369; ENSECAG00000010221.
    GeneIDi100051073.
    KEGGiecb:100051073.

    Cross-referencesi

    Sequence databases

    RefSeqi XP_001491778.1. XM_001491728.2.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSECAT00000010797 ; ENSECAP00000008369 ; ENSECAG00000010221 .
    GeneIDi 100051073.
    KEGGi ecb:100051073.

    Phylogenomic databases

    GeneTreei ENSGT00390000002882.
    KOi K01176.
    OMAi SNTYITA.
    OrthoDBi EOG7RJPR2.
    TreeFami TF312850.

    Family and domain databases

    Gene3Di 2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    InterProi IPR006048. A-amylase_b_C.
    IPR006046. Alpha_amylase.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    PF02806. Alpha-amylase_C. 1 hit.
    [Graphical view ]
    PRINTSi PR00110. ALPHAAMYLASE.
    SMARTi SM00642. Aamy. 1 hit.
    SM00632. Aamy_C. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51445. SSF51445. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence, comparative analysis, and population genetics of the domestic horse."
      Broad Institute Genome Sequencing Platform, Broad Institute Whole Genome Assembly Team
      Wade C.M., Giulotto E., Sigurdsson S., Zoli M., Gnerre S., Imsland F., Lear T.L., Adelson D.L., Bailey E., Bellone R.R., Bloecker H., Distl O., Edgar R.C., Garber M., Leeb T., Mauceli E., MacLeod J.N., Penedo M.C.T.
      , Raison J.M., Sharpe T., Vogel J., Andersson L., Antczak D.F., Biagi T., Binns M.M., Chowdhary B.P., Coleman S.J., Della Valle G., Fryc S., Guerin G., Hasegawa T., Hill E.W., Jurka J., Kiialainen A., Lindgren G., Liu J., Magnani E., Mickelson J.R., Murray J., Nergadze S.G., Onofrio R., Pedroni S., Piras M.F., Raudsepp T., Rocchi M., Roeed K.H., Ryder O.A., Searle S., Skow L., Swinburne J.E., Syvaenen A.C., Tozaki T., Valberg S.J., Vaudin M., White J.R., Zody M.C., Lander E.S., Lindblad-Toh K.
      Science 326:865-867(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ThoroughbredImported.
    2. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: ThoroughbredImported.

    Entry informationi

    Entry nameiF6QDH8_HORSE
    AccessioniPrimary (citable) accession number: F6QDH8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 27, 2011
    Last sequence update: July 27, 2011
    Last modified: October 1, 2014
    This is version 19 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3