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Protein

POU domain protein

Gene

POU5F1

Organism
Callithrix jacchus (White-tufted-ear marmoset)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi133 – 192HomeoboxPROSITE-ProRule annotationAdd BLAST60

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processTranscription, Transcription regulationPROSITE-ProRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
POU domain proteinUniRule annotation
Gene namesi
Name:POU5F1Imported
OrganismiCallithrix jacchus (White-tufted-ear marmoset)Imported
Taxonomic identifieri9483 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniPlatyrrhiniCebidaeCallitrichinaeCallithrixCallithrix
Proteomesi
  • UP000008225 Componenti: Chromosome 4

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini41 – 115POU-specificInterPro annotationAdd BLAST75
Domaini131 – 191HomeoboxInterPro annotationAdd BLAST61

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili42 – 62Sequence analysisAdd BLAST21

Sequence similaritiesi

Belongs to the POU transcription factor family.UniRule annotationSAAS annotation

Keywords - Domaini

Coiled coilSequence analysis, HomeoboxPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG3802 Eukaryota
ENOG410XQ7X LUCA
GeneTreeiENSGT00760000118935

Family and domain databases

CDDicd00086 homeodomain, 1 hit
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR017970 Homeobox_CS
IPR001356 Homeobox_dom
IPR010982 Lambda_DNA-bd_dom_sf
IPR013847 POU
IPR000327 POU_dom
IPR015585 POU_dom_5
PANTHERiPTHR11636:SF86 PTHR11636:SF86, 1 hit
PfamiView protein in Pfam
PF00046 Homeobox, 1 hit
PF00157 Pou, 1 hit
PRINTSiPR00028 POUDOMAIN
SMARTiView protein in SMART
SM00389 HOX, 1 hit
SM00352 POU, 1 hit
SUPFAMiSSF46689 SSF46689, 1 hit
SSF47413 SSF47413, 1 hit
PROSITEiView protein in PROSITE
PS00027 HOMEOBOX_1, 1 hit
PS50071 HOMEOBOX_2, 1 hit
PS00035 POU_1, 1 hit
PS00465 POU_2, 1 hit
PS51179 POU_3, 1 hit

Sequencei

Sequence statusi: Complete.

F6Q996-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
RHSYRAFLGA TGMLLNLETG IDNWCIYVLT CLLSFKIQSQ DIKALQKELE
60 70 80 90 100
QFAKLLKQKR ITLGYTQADV GLTLGVLFGK VFSQTTICRF EALQLSFKNM
110 120 130 140 150
CKLRPLLQKW VEEADNNENL QEICKAETLV QARKRKRTSI ENRVRGSLEN
160 170 180 190 200
LFLQCPKPTL QQISHIAQQL GLEKDVVRVW FCNRRQKGKR SSSDYAQRED
210 220 230 240 250
FEAAGSPFSG GPVSFPLAPG PHFGTPGYGS PHFTALYSSV PFPEGEAFPP
260
VSVPTLGSPM HSN
Length:263
Mass (Da):29,512
Last modified:July 27, 2011 - v1
Checksum:iF59F8BC9FF3F8D93
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
ACFV01150659 Genomic DNA No translation available.
ACFV01150660 Genomic DNA No translation available.
ACFV01150661 Genomic DNA No translation available.
ACFV01150662 Genomic DNA No translation available.
ACFV01150663 Genomic DNA No translation available.
ACFV01150664 Genomic DNA No translation available.
ACFV01150665 Genomic DNA No translation available.
ACFV01150666 Genomic DNA No translation available.
ACFV01150667 Genomic DNA No translation available.
ACFV01150668 Genomic DNA No translation available.

Genome annotation databases

EnsembliENSCJAT00000038863; ENSCJAP00000036798; ENSCJAG00000019789

Similar proteinsi

Entry informationi

Entry nameiF6Q996_CALJA
AccessioniPrimary (citable) accession number: F6Q996
Entry historyiIntegrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: March 28, 2018
This is version 48 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health