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Protein

POU domain protein

Gene

POU5F1

Organism
Callithrix jacchus (White-tufted-ear marmoset)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi133 – 192HomeoboxPROSITE-ProRule annotationAdd BLAST60

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processTranscription, Transcription regulationPROSITE-ProRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
POU domain proteinUniRule annotation
Gene namesi
Name:POU5F1Imported
OrganismiCallithrix jacchus (White-tufted-ear marmoset)Imported
Taxonomic identifieri9483 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniPlatyrrhiniCebidaeCallitrichinaeCallithrixCallithrix
Proteomesi
  • UP000008225 Componenti: Chromosome 4

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini41 – 115POU-specificInterPro annotationAdd BLAST75
Domaini131 – 191HomeoboxInterPro annotationAdd BLAST61

Sequence similaritiesi

Belongs to the POU transcription factor family.UniRule annotationSAAS annotation

Keywords - Domaini

HomeoboxPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG3802. Eukaryota.
ENOG410XQ7X. LUCA.
GeneTreeiENSGT00760000118935.

Family and domain databases

CDDicd00086. homeodomain. 1 hit.
InterProiView protein in InterPro
IPR009057. Homeobox-like_sf.
IPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR010982. Lambda_DNA-bd_dom_sf.
IPR013847. POU.
IPR000327. POU_dom.
IPR015585. POU_dom_5.
PANTHERiPTHR11636:SF86. PTHR11636:SF86. 1 hit.
PfamiView protein in Pfam
PF00046. Homeobox. 1 hit.
PF00157. Pou. 1 hit.
PRINTSiPR00028. POUDOMAIN.
SMARTiView protein in SMART
SM00389. HOX. 1 hit.
SM00352. POU. 1 hit.
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF47413. SSF47413. 1 hit.
PROSITEiView protein in PROSITE
PS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
PS00035. POU_1. 1 hit.
PS00465. POU_2. 1 hit.
PS51179. POU_3. 1 hit.

Sequencei

Sequence statusi: Complete.

F6Q996-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
RHSYRAFLGA TGMLLNLETG IDNWCIYVLT CLLSFKIQSQ DIKALQKELE
60 70 80 90 100
QFAKLLKQKR ITLGYTQADV GLTLGVLFGK VFSQTTICRF EALQLSFKNM
110 120 130 140 150
CKLRPLLQKW VEEADNNENL QEICKAETLV QARKRKRTSI ENRVRGSLEN
160 170 180 190 200
LFLQCPKPTL QQISHIAQQL GLEKDVVRVW FCNRRQKGKR SSSDYAQRED
210 220 230 240 250
FEAAGSPFSG GPVSFPLAPG PHFGTPGYGS PHFTALYSSV PFPEGEAFPP
260
VSVPTLGSPM HSN
Length:263
Mass (Da):29,512
Last modified:July 27, 2011 - v1
Checksum:iF59F8BC9FF3F8D93
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
ACFV01150659 Genomic DNA. No translation available.
ACFV01150660 Genomic DNA. No translation available.
ACFV01150661 Genomic DNA. No translation available.
ACFV01150662 Genomic DNA. No translation available.
ACFV01150663 Genomic DNA. No translation available.
ACFV01150664 Genomic DNA. No translation available.
ACFV01150665 Genomic DNA. No translation available.
ACFV01150666 Genomic DNA. No translation available.
ACFV01150667 Genomic DNA. No translation available.
ACFV01150668 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSCJAT00000038863; ENSCJAP00000036798; ENSCJAG00000019789.

Similar proteinsi

Entry informationi

Entry nameiF6Q996_CALJA
AccessioniPrimary (citable) accession number: F6Q996
Entry historyiIntegrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: November 22, 2017
This is version 44 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported