F6IPC9 (F6IPC9_9SPHN) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
RNA polymerase sigma factor RuleBase RU000715

Gene names

ORF Names:

PP1Y_AT24861 EMBL CCA93281.1

Organism

Novosphingobium sp. PP1Y EMBL CCA93281.1

Taxonomic identifier

702113 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Sphingomonadales › Sphingomonadaceae › Novosphingobium

Protein attributes

Sequence length	677 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released By similarity. RuleBase RU000715
Sequence similarities	Belongs to the sigma-70 factor family. RuleBase RU000715

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Ligand	DNA-binding SAAS SAAS007127 RuleBase RU000715
Molecular function	Sigma factor SAAS SAAS007127 RuleBase RU000715
Gene Ontology (GO)
Biological_process	DNA-dependent transcription, initiation Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F6IPC9 [UniParc]. Last modified July 27, 2011. Version 1. Checksum: 17A761CA54A34DAE	FASTA	677	77,124
	10 20 30 40 50 60 MSRNDDSSGD KNDGTDAPLI DLNEASIKKL IARAKRRGVI TYDELNEALP QDQMSSEQIE 70 80 90 100 110 120 DIMAAISEMG VNIVESDEDG QSDDDNDNDN DVEEVDSDES APKMVAETKK KETVERTDDP 130 140 150 160 170 180 VRMYLREMGA VELLSREGEI AIAKRIEAGR DMMILGLCES PITFHAIIQW SEALNNGEMQ 190 200 210 220 230 240 LREILDLDAM LSKEPAPESL NEDGESDDDG EISEATAGPS YKEDDDEEEE ESADGEEGED 250 260 270 280 290 300 GEGRSERQRD EDEEDNTLSL AQMEAALKPE ALEKFARITE LFQAFEKLQS ERLDALALGI 310 320 330 340 350 360 DFPTAKEDHY QQLREELTAQ VESVQFHATK IEYLVDNLYA FNRRLTTLGG QMLRLAERHK 370 380 390 400 410 420 VKRADFLNTY VGRELDDSWL PEMSRKDKKW AAFAENEADS VERIRSEISD IAAATGMALP 430 440 450 460 470 480 EFRRIVNMVQ KGEREARIAK KEMVEANLRL VISIAKKYTN RGLQFLDLIQ EGNIGLMKAV 490 500 510 520 530 540 DKFEYRRGYK FSTYATWWIR QAITRSIADQ ARTIRIPVHM IETINKLVRT SRQFLHEQGR 550 560 570 580 590 600 EPTPEEMAER LSMPLEKVRK VMKIAKEPIS LETPIGDEED SHLGDFIEDK NAIIPVDAAI 610 620 630 640 650 660 QANLKETVTR VLASLTPREE RVLRMRFGIG MNTDHTLEEV GQQFSVTRER IRQIEAKALR 670 KLKHPSRSRK MRSFLDQ

References

[1]

"De Novo Sequencing and Assembly of the Whole Genome of Novosphingobium sp. Strain PP1Y." D'Argenio V., Petrillo M., Cantiello P., Naso B., Cozzuto L., Notomista E., Paolella G., Di Donato A., Salvatore F. J. Bacteriol. 193:4296-4296(2011) Cited for: NUCLEOTIDE SEQUENCE. Strain: PP1Y EMBL CCA93281.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	FR856862 Genomic DNA. Translation: CCA93281.1.
RefSeq	YP_004535099.1. NC_015580.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CCA93281; CCA93281; PP1Y_AT24861.
GeneID	10715806.
KEGG	npp:PP1Y_AT24861.
Phylogenomic databases
KO	K03086.
Enzyme and pathway databases
BioCyc	NSP702113:GJD2-2351-MONOMER.
Family and domain databases
Gene3D	1.10.10.10. 2 hits.
InterPro	IPR014284. RNA_pol_sigma-70_dom. IPR000943. RNA_pol_sigma70. IPR009042. RNA_pol_sigma70_r1_2. IPR007627. RNA_pol_sigma70_r2. IPR007624. RNA_pol_sigma70_r3. IPR007630. RNA_pol_sigma70_r4. IPR007631. RNA_pol_sigma_70_non-ess. IPR007127. RNA_pol_sigma_70_r1_1. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR012760. RNA_pol_sigma_RpoD_C. IPR011991. WHTH_DNA-bd_dom. [Graphical view]
Pfam	PF04546. Sigma70_ner. 1 hit. PF03979. Sigma70_r1_1. 1 hit. PF00140. Sigma70_r1_2. 1 hit. PF04542. Sigma70_r2. 1 hit. PF04539. Sigma70_r3. 1 hit. PF04545. Sigma70_r4. 1 hit. [Graphical view]
PRINTS	PR00046. SIGMA70FCT.
SUPFAM	SSF88946. Sigma_r2. 1 hit. SSF88659. Sigma_r3_r4. 2 hits.
TIGRFAMs	TIGR02393. RpoD_Cterm. 1 hit. TIGR02937. sigma70-ECF. 1 hit.
PROSITE	PS00715. SIGMA70_1. 1 hit. PS00716. SIGMA70_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F6IPC9_9SPHN

Accession

Primary (citable) accession number: F6IPC9

Entry history

Integrated into UniProtKB/TrEMBL:	July 27, 2011
Last sequence update:	July 27, 2011
Last modified:	May 1, 2013
This is version 13 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)