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F6INB4 (F6INB4_9SPHN) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 14. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Malate synthase G RuleBase RU003572 HAMAP-Rule MF_00641
EC=2.3.3.9 RuleBase RU003572 HAMAP-Rule MF_00641
Gene names
Name:glcB HAMAP-Rule MF_00641
ORF Names:PP1Y_AT20390 EMBL CCA92916.1
OrganismNovosphingobium sp. PP1Y EMBL CCA92916.1
Taxonomic identifier702113 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Sphingomonadales › Sphingomonadaceae › Novosphingobium

Protein attributes

Sequence length704 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Acetyl-CoA + H2O + glyoxylate = (S)-malate + CoA. RuleBase RU003572 HAMAP-Rule MF_00641 SAAS SAAS006253

Pathway

Carbohydrate metabolism; glyoxylate cycle; (S)-malate from isocitrate: step 2/2. RuleBase RU003572 HAMAP-Rule MF_00641 SAAS SAAS006253

Subunit structure

Monomer By similarity. SAAS SAAS006253 HAMAP-Rule MF_00641

Subcellular location

Cytoplasm By similarity RuleBase RU003572 HAMAP-Rule MF_00641.

Sequence similarities

Belongs to the malate synthase family. GlcB subfamily. RuleBase RU003572 HAMAP-Rule MF_00641

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site3181Proton acceptor By similarity HAMAP-Rule MF_00641
Active site6091Proton donor By similarity HAMAP-Rule MF_00641

Sequences

Sequence LengthMass (Da)Tools
F6INB4 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: CDA840251055D982

FASTA70476,484
        10         20         30         40         50         60 
MTQRVERSGL QIDAGLAAFV EEKVLAPIGQ DTDAFWSGFA QLLARFAPRN RELLEKRDHL 

        70         80         90        100        110        120 
QSQIDAWHMS RAGRPIEQGE YQAFLQDIGY LVPEPEVFSI GTRNVDPEIA TMAGPQLVVP 

       130        140        150        160        170        180 
VLNARFLLNA ANARWGSLYD AFYGTDALDA APAQGKGYDP VRGAAVIAEG RKFLDKALPL 

       190        200        210        220        230        240 
ASGSWADVDS LEVTLVDPDQ CVGETRKGCL FKSNGLHIEI VVDPSSQVGA TDKAGISDIV 

       250        260        270        280        290        300 
LEAALTTIVD LEDSVAAVDA EDKLLAYSNW LGVIRGDLTD TFEKGGQTLT RELAGNKVVT 

       310        320        330        340        350        360 
VPTGEAQELP GRSLLFVRNV GHLMTNPAIL LPDGSEIPEG IMDAVITSAI SAQDVKGMTR 

       370        380        390        400        410        420 
YGNSRKGSIY IVKPKMHGPE ECSFTNDLFD AVEDLLQLPR NTVKVGVMDE ERRTSANLAA 

       430        440        450        460        470        480 
CIHAVKDRIV FINTGFLDRT GDEIHTSMRA GPMIRKSAIK GSTWIAAYEK RNVAIGLRHG 

       490        500        510        520        530        540 
LSGVAQIGKG MWAAPDMMRD MMEQKVGHPR TGANTAWVPS PTAATLHAMH YHEVDVFGLR 

       550        560        570        580        590        600 
EGIAAEEIPG LDLLLQIPLA DGANWSEDEV REELENNAQG LLGYVVRWID QGVGCSKVPD 

       610        620        630        640        650        660 
INDVGLMEDR ATLRISSQHM ANWLLHGVCT EAQVMDALKR MAEKVDAQNA GDPLYAPMAG 

       670        680        690        700 
NWDTSLAFKA ACDLVFKGVE QPSGYTEPLL HAWRLKKKSA LVTA

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References

[1]"De Novo Sequencing and Assembly of the Whole Genome of Novosphingobium sp. Strain PP1Y."
D'Argenio V., Petrillo M., Cantiello P., Naso B., Cozzuto L., Notomista E., Paolella G., Di Donato A., Salvatore F.
J. Bacteriol. 193:4296-4296(2011)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: PP1Y EMBL CCA92916.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		FR856862 Genomic DNA. Translation: CCA92916.1.
RefSeqYP_004534734.1. NC_015580.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCCA92916; CCA92916; PP1Y_AT20390.
GeneID10715386.
KEGGnpp:PP1Y_AT20390.

Phylogenomic databases

KOK01638.

Enzyme and pathway databases

BioCycNSP702113:GJD2-1971-MONOMER.
UniPathwayUPA00703; UER00720.

Family and domain databases

Gene3D2.170.170.11. 2 hits.
HAMAPMF_00641. Malate_synth_G.
InterProIPR011076. Malate_synth-like.
IPR023310. Malate_synth_G_beta_sub_dom.
IPR001465. Malate_synthase.
IPR006253. Malate_synthG.
[Graphical view]
PANTHERPTHR21631:SF1. PTHR21631:SF1. 1 hit.
PfamPF01274. Malate_synthase. 1 hit.
[Graphical view]
SUPFAMSSF51645. Malat_synth_like. 1 hit.
TIGRFAMsTIGR01345. malate_syn_G. 1 hit.
ProtoNetSearch...

Entry information

Entry nameF6INB4_9SPHN
AccessionPrimary (citable) accession number: F6INB4
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: April 3, 2013
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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