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Protein

Glutamate decarboxylase

Gene

VIT_17s0000g00920

Organism
Vitis vinifera (Grape)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

L-glutamate = 4-aminobutanoate + CO2.UniRule annotation

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

DecarboxylaseUniRule annotation, Lyase

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Glutamate decarboxylaseUniRule annotation (EC:4.1.1.15UniRule annotation)
Gene namesi
Ordered Locus Names:VIT_17s0000g00920Imported
OrganismiVitis vinifera (Grape)Imported
Taxonomic identifieri29760 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsVitalesVitaceaeVitis
ProteomesiUP000009183 Componenti: Chromosome 17

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Proteomic databases

PRIDEiF6I1W0.

Interactioni

Protein-protein interaction databases

STRINGi29760.VIT_17s0000g00920.t01.

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

InParanoidiF6I1W0.
KOiK01580.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.

Sequencei

Sequence statusi: Complete.

F6I1W0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVISTTISDS SEHLHATFAS RYVRDPLPKF KMPERSIPKE AAFQIISDEL
60 70 80 90 100
MLDGNPRLNL ASFVTTWMEE ECDKLIMASV NKNYVDMDEY PVTTELQNRC
110 120 130 140 150
VNMIAHLFNA PVGENETAIG VGTVGSSEAI MLAGLAFKRK WQQKRKSEGK
160 170 180 190 200
PYDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLREGYYVM DPVKAVEMVD
210 220 230 240 250
ENTICVAAIL GSTLTGEFED VKLLNELLTK KNTETGWGTP IHVDAASGGF
260 270 280 290 300
IAPFLHPDLE WDFRLPLVKS INVSGHKYGL VYAGVGWVVW RTKDDLPEEL
310 320 330 340 350
IFHINYLGSD QPTFTLNFSK GSSQIIAQYY QFIRLGFEGY KNIMTNCMDN
360 370 380 390 400
ANVLKQGLVE TGRFEIVSKD IGVPLVAFSL KDTSNYTVFD ISNNLRRYGW
410 420 430 440 450
IIPAYTMPPD AEHIAVLRVV VREDFSRSLA ERLLSDIEKV MREMDAVQSR
460 470 480 490 500
ATTRATHVIA TVDETREGEG EGSEKLNKKT VMENREEIAM YWKRVVDRKK

TSGVC
Length:505
Mass (Da):57,126
Last modified:July 27, 2011 - v1
Checksum:i789290CC339752DD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN596517 Genomic DNA. Translation: CCB60927.1.
RefSeqiXP_002263081.1. XM_002263045.3.

Genome annotation databases

EnsemblPlantsiVIT_17s0000g00920.t01; VIT_17s0000g00920.t01; VIT_17s0000g00920.
GeneIDi100265999.
KEGGivvi:100265999.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN596517 Genomic DNA. Translation: CCB60927.1.
RefSeqiXP_002263081.1. XM_002263045.3.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi29760.VIT_17s0000g00920.t01.

Proteomic databases

PRIDEiF6I1W0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiVIT_17s0000g00920.t01; VIT_17s0000g00920.t01; VIT_17s0000g00920.
GeneIDi100265999.
KEGGivvi:100265999.

Phylogenomic databases

InParanoidiF6I1W0.
KOiK01580.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla."
    The French-Italian Public Consortium for Grapevine Genome Characterization.
    Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J.
    , Bruyere C., Billault A., Segurens B., Gouyvenoux M., Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quetier F., Wincker P.
    Nature 449:463-467(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Pinot noir / PN40024Imported.

Entry informationi

Entry nameiF6I1W0_VITVI
AccessioniPrimary (citable) accession number: F6I1W0
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: June 24, 2015
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.