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Protein

Glutamate decarboxylase

Gene

VIT_01s0011g06600

Organism
Vitis vinifera (Grape)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

L-glutamate = 4-aminobutanoate + CO2.UniRule annotation

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

  1. glutamate decarboxylase activity Source: UniProtKB-EC
  2. pyridoxal phosphate binding Source: InterPro

GO - Biological processi

  1. glutamate metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

DecarboxylaseUniRule annotation, Lyase

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Glutamate decarboxylaseUniRule annotation (EC:4.1.1.15UniRule annotation)
Gene namesi
Ordered Locus Names:VIT_01s0011g06600Imported
OrganismiVitis vinifera (Grape)Imported
Taxonomic identifieri29760 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsVitalesVitaceaeVitis
ProteomesiUP000009183: Chromosome 1

Structurei

3D structure databases

ProteinModelPortaliF6HF90.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

InParanoidiF6HF90.
KOiK01580.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.

Sequencei

Sequence statusi: Complete.

F6HF90-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MVLSKTASES DVSVHSTFAS RYVKASLPRF KLPENSIPKE AAYQIINDEL
60 70 80 90 100
MLDGNPRLNL ASFVTTWMEP ECDKLMMAAI NKNYVDMDEY PVTTELQNRC
110 120 130 140 150
VNIIAHLFNA PLEDSEAAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK
160 170 180 190 200
PYDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLRDGYYVM DPEKAVEMVD
210 220 230 240 250
ENTICVAAIL GSTLNGEFED VKLLNDLLVE KNKQTGWDTP IHVDAASGGF
260 270 280 290 300
IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVVW RSKEDLPEEL
310 320 330 340 350
IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGFEGY RNVMENCQEN
360 370 380 390 400
AMALKEGLEK TGRFNIISKD NGVPLVAFSL KDNSCHDEFE VADMLRRFGW
410 420 430 440 450
IVPAYTMPPD AQHVTVLRVV VREDFSRTLA ERLVFDITKV LHELDMLPAK
460 470 480 490
LSAKISVEEK KQNGTILKKS VIETQREITD AWKKFVMAKK TNGVC
Length:495
Mass (Da):55,924
Last modified:July 27, 2011 - v1
Checksum:iFC102C5DD18ED49A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN595752 Genomic DNA. Translation: CCB50739.1.
RefSeqiXP_002285267.1. XM_002285231.2.
UniGeneiVvi.32665.

Genome annotation databases

EnsemblPlantsiVIT_01s0011g06600.t01; VIT_01s0011g06600.t01; VIT_01s0011g06600.
GeneIDi100266215.
KEGGivvi:100266215.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN595752 Genomic DNA. Translation: CCB50739.1.
RefSeqiXP_002285267.1. XM_002285231.2.
UniGeneiVvi.32665.

3D structure databases

ProteinModelPortaliF6HF90.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiVIT_01s0011g06600.t01; VIT_01s0011g06600.t01; VIT_01s0011g06600.
GeneIDi100266215.
KEGGivvi:100266215.

Phylogenomic databases

InParanoidiF6HF90.
KOiK01580.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla."
    The French-Italian Public Consortium for Grapevine Genome Characterization.
    Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J.
    , Bruyere C., Billault A., Segurens B., Gouyvenoux M., Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quetier F., Wincker P.
    Nature 449:463-467(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Pinot noir / PN40024Imported.

Entry informationi

Entry nameiF6HF90_VITVI
AccessioniPrimary (citable) accession number: F6HF90
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: February 4, 2015
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.