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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Lacal_2600

Organism
Lacinutrix sp. (strain 5H-3-7-4)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciLSP983544:GHSZ-2641-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Lacal_2600Imported
OrganismiLacinutrix sp. (strain 5H-3-7-4)Imported
Taxonomic identifieri983544 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeLacinutrix
ProteomesiUP000008297: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF6GJJ6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK10747.
OMAiGQPYPFF.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F6GJJ6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKHFSNLISA LEITNKTNAK IEALVNYFKT APEKDKLWLI SIFTGKRPPR
60 70 80 90 100
PVKSSLMKQW AFEITKLPEW LFLESYSTVG DLGETIALIL PNPTHTIEKP
110 120 130 140 150
LHQWMQELIA LKPKTEEEKK KYVLNAWSGL EKQERLIFNK LIGGSFRIGV
160 170 180 190 200
SKKTLVNALS KLSGIDANQL MHSIIGNWNI ETINFSDLLN GSHINYDNSK
210 220 230 240 250
PYPFCLAYAL EKDLLALGKP EDWQVEYKWD GIRGQIVKRN NEVYIWSRGE
260 270 280 290 300
ELVTSQFPEI VETITNFKDD FVIDGEILAL KDSTVLLFND LQKRLNRKNI
310 320 330 340 350
TKKLLEDIPV GFYAYDLLEY NNQDFRDKPM QERRNQLETL FSTVVINDKL
360 370 380 390 400
KLSKIINFKN WEVLKEIREN ARTINSEGLM LKQKASPYHV GRKKGDWWKW
410 420 430 440 450
KVEPLTIDAV MIYAQKGSGR RSSKYTDYTF AVKKDDGLVT VAKAYSGLTD
460 470 480 490 500
AEITEISKWV NKNALEKFGP VRTVKPELVF EIAFEGIAYS KRHKSGVALR
510 520
FPRIKRWRKD KPVSEIDTIE SVTALIEAQ
Length:529
Mass (Da):61,072
Last modified:July 27, 2011 - v1
Checksum:i03AB2A342576B2F1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002825 Genomic DNA. Translation: AEH02441.1.
RefSeqiWP_013871220.1. NC_015638.1.
YP_004580869.1. NC_015638.1.

Genome annotation databases

EnsemblBacteriaiAEH02441; AEH02441; Lacal_2600.
GeneIDi10780269.
KEGGilan:Lacal_2600.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002825 Genomic DNA. Translation: AEH02441.1.
RefSeqiWP_013871220.1. NC_015638.1.
YP_004580869.1. NC_015638.1.

3D structure databases

ProteinModelPortaliF6GJJ6.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEH02441; AEH02441; Lacal_2600.
GeneIDi10780269.
KEGGilan:Lacal_2600.

Phylogenomic databases

KOiK10747.
OMAiGQPYPFF.

Enzyme and pathway databases

BioCyciLSP983544:GHSZ-2641-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequences of Krokinobacter sp. strain 4H-3-7-5 and Lacinutrix sp. strain 5H-3-7-4, polysaccharide-degrading members of the family Flavobacteriaceae."
    Klippel B., Lochner A., Bruce D.C., Walston Davenport K., Detter C., Goodwin L.A., Han J., Han S., Hauser L., Land M.L., Nolan M., Ovchinnikova G., Pennacchio L., Pitluck S., Tapia R., Woyke T., Wiebusch S., Basner A.
    , Abe F., Horikoshi K., Keller M., Antranikian G.
    J. Bacteriol. 193:4545-4546(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 5H-3-7-4Imported.

Entry informationi

Entry nameiF6GJJ6_LACS5
AccessioniPrimary (citable) accession number: F6GJJ6
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: March 4, 2015
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.