F6GJJ6 (F6GJJ6_LACS5) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL AEH02441.1

Gene names

Ordered Locus Names:

Lacal_2600 EMBL AEH02441.1

Organism

Lacinutrix sp. (strain 5H-3-7-4) [Complete proteome] [HAMAP] EMBL AEH02441.1

Taxonomic identifier

983544 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Flavobacteriia › Flavobacteriales › Flavobacteriaceae › Lacinutrix

Protein attributes

Sequence length	529 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AEH02441.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F6GJJ6 [UniParc]. Last modified July 27, 2011. Version 1. Checksum: 03AB2A342576B2F1	FASTA	529	61,072
	10 20 30 40 50 60 MKHFSNLISA LEITNKTNAK IEALVNYFKT APEKDKLWLI SIFTGKRPPR PVKSSLMKQW 70 80 90 100 110 120 AFEITKLPEW LFLESYSTVG DLGETIALIL PNPTHTIEKP LHQWMQELIA LKPKTEEEKK 130 140 150 160 170 180 KYVLNAWSGL EKQERLIFNK LIGGSFRIGV SKKTLVNALS KLSGIDANQL MHSIIGNWNI 190 200 210 220 230 240 ETINFSDLLN GSHINYDNSK PYPFCLAYAL EKDLLALGKP EDWQVEYKWD GIRGQIVKRN 250 260 270 280 290 300 NEVYIWSRGE ELVTSQFPEI VETITNFKDD FVIDGEILAL KDSTVLLFND LQKRLNRKNI 310 320 330 340 350 360 TKKLLEDIPV GFYAYDLLEY NNQDFRDKPM QERRNQLETL FSTVVINDKL KLSKIINFKN 370 380 390 400 410 420 WEVLKEIREN ARTINSEGLM LKQKASPYHV GRKKGDWWKW KVEPLTIDAV MIYAQKGSGR 430 440 450 460 470 480 RSSKYTDYTF AVKKDDGLVT VAKAYSGLTD AEITEISKWV NKNALEKFGP VRTVKPELVF 490 500 510 520 EIAFEGIAYS KRHKSGVALR FPRIKRWRKD KPVSEIDTIE SVTALIEAQ

References

[1]

"Complete genome sequences of Krokinobacter sp. strain 4H-3-7-5 and Lacinutrix sp. strain 5H-3-7-4, polysaccharide-degrading members of the family Flavobacteriaceae." Klippel B., Lochner A., Bruce D.C., Walston Davenport K., Detter C., Goodwin L.A., Han J., Han S., Hauser L., Land M.L., Nolan M., Ovchinnikova G., Pennacchio L., Pitluck S., Tapia R., Woyke T., Wiebusch S., Basner A. , Abe F., Horikoshi K., Keller M., Antranikian G. J. Bacteriol. 193:4545-4546(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 5H-3-7-4 EMBL AEH02441.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002825 Genomic DNA. Translation: AEH02441.1.
RefSeq	YP_004580869.1. NC_015638.1.
3D structure databases
ProteinModelPortal	F6GJJ6.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEH02441; AEH02441; Lacal_2600.
GeneID	10780269.
KEGG	lan:Lacal_2600.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
Enzyme and pathway databases
BioCyc	LSP983544:GHSZ-2641-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F6GJJ6_LACS5

Accession

Primary (citable) accession number: F6GJJ6

Entry history

Integrated into UniProtKB/TrEMBL:	July 27, 2011
Last sequence update:	July 27, 2011
Last modified:	May 29, 2013
This is version 13 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)