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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Lacal_2600

Organism
Lacinutrix sp. (strain 5H-3-7-4)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Lacal_2600Imported
OrganismiLacinutrix sp. (strain 5H-3-7-4)Imported
Taxonomic identifieri983544 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeLacinutrix
Proteomesi
  • UP000008297 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi983544.Lacal_2600.

Structurei

3D structure databases

ProteinModelPortaliF6GJJ6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini303 – 434DNA_LIGASE_A3InterPro annotationAdd BLAST132

Phylogenomic databases

eggNOGiENOG4107QIM. Bacteria.
COG1793. LUCA.
KOiK10747.
OMAiAAWAVYF.
OrthoDBiPOG091H09SJ.

Family and domain databases

InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F6GJJ6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKHFSNLISA LEITNKTNAK IEALVNYFKT APEKDKLWLI SIFTGKRPPR
60 70 80 90 100
PVKSSLMKQW AFEITKLPEW LFLESYSTVG DLGETIALIL PNPTHTIEKP
110 120 130 140 150
LHQWMQELIA LKPKTEEEKK KYVLNAWSGL EKQERLIFNK LIGGSFRIGV
160 170 180 190 200
SKKTLVNALS KLSGIDANQL MHSIIGNWNI ETINFSDLLN GSHINYDNSK
210 220 230 240 250
PYPFCLAYAL EKDLLALGKP EDWQVEYKWD GIRGQIVKRN NEVYIWSRGE
260 270 280 290 300
ELVTSQFPEI VETITNFKDD FVIDGEILAL KDSTVLLFND LQKRLNRKNI
310 320 330 340 350
TKKLLEDIPV GFYAYDLLEY NNQDFRDKPM QERRNQLETL FSTVVINDKL
360 370 380 390 400
KLSKIINFKN WEVLKEIREN ARTINSEGLM LKQKASPYHV GRKKGDWWKW
410 420 430 440 450
KVEPLTIDAV MIYAQKGSGR RSSKYTDYTF AVKKDDGLVT VAKAYSGLTD
460 470 480 490 500
AEITEISKWV NKNALEKFGP VRTVKPELVF EIAFEGIAYS KRHKSGVALR
510 520
FPRIKRWRKD KPVSEIDTIE SVTALIEAQ
Length:529
Mass (Da):61,072
Last modified:July 27, 2011 - v1
Checksum:i03AB2A342576B2F1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002825 Genomic DNA. Translation: AEH02441.1.
RefSeqiWP_013871220.1. NC_015638.1.

Genome annotation databases

EnsemblBacteriaiAEH02441; AEH02441; Lacal_2600.
KEGGilan:Lacal_2600.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002825 Genomic DNA. Translation: AEH02441.1.
RefSeqiWP_013871220.1. NC_015638.1.

3D structure databases

ProteinModelPortaliF6GJJ6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi983544.Lacal_2600.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEH02441; AEH02441; Lacal_2600.
KEGGilan:Lacal_2600.

Phylogenomic databases

eggNOGiENOG4107QIM. Bacteria.
COG1793. LUCA.
KOiK10747.
OMAiAAWAVYF.
OrthoDBiPOG091H09SJ.

Family and domain databases

InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiF6GJJ6_LACS5
AccessioniPrimary (citable) accession number: F6GJJ6
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: November 2, 2016
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.