Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

F6GJJ6

- F6GJJ6_LACS5

UniProt

F6GJJ6 - F6GJJ6_LACS5

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Submitted name:

ATP dependent DNA ligase

Gene

Lacal_2600

Organism
Lacinutrix sp. (strain 5H-3-7-4)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciLSP983544:GHSZ-2641-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Lacal_2600Imported
OrganismiLacinutrix sp. (strain 5H-3-7-4)Imported
Taxonomic identifieri983544 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeLacinutrix
ProteomesiUP000008297: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF6GJJ6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiGEFYPFQ.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F6GJJ6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKHFSNLISA LEITNKTNAK IEALVNYFKT APEKDKLWLI SIFTGKRPPR
60 70 80 90 100
PVKSSLMKQW AFEITKLPEW LFLESYSTVG DLGETIALIL PNPTHTIEKP
110 120 130 140 150
LHQWMQELIA LKPKTEEEKK KYVLNAWSGL EKQERLIFNK LIGGSFRIGV
160 170 180 190 200
SKKTLVNALS KLSGIDANQL MHSIIGNWNI ETINFSDLLN GSHINYDNSK
210 220 230 240 250
PYPFCLAYAL EKDLLALGKP EDWQVEYKWD GIRGQIVKRN NEVYIWSRGE
260 270 280 290 300
ELVTSQFPEI VETITNFKDD FVIDGEILAL KDSTVLLFND LQKRLNRKNI
310 320 330 340 350
TKKLLEDIPV GFYAYDLLEY NNQDFRDKPM QERRNQLETL FSTVVINDKL
360 370 380 390 400
KLSKIINFKN WEVLKEIREN ARTINSEGLM LKQKASPYHV GRKKGDWWKW
410 420 430 440 450
KVEPLTIDAV MIYAQKGSGR RSSKYTDYTF AVKKDDGLVT VAKAYSGLTD
460 470 480 490 500
AEITEISKWV NKNALEKFGP VRTVKPELVF EIAFEGIAYS KRHKSGVALR
510 520
FPRIKRWRKD KPVSEIDTIE SVTALIEAQ
Length:529
Mass (Da):61,072
Last modified:July 27, 2011 - v1
Checksum:i03AB2A342576B2F1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002825 Genomic DNA. Translation: AEH02441.1.
RefSeqiWP_013871220.1. NC_015638.1.
YP_004580869.1. NC_015638.1.

Genome annotation databases

EnsemblBacteriaiAEH02441; AEH02441; Lacal_2600.
GeneIDi10780269.
KEGGilan:Lacal_2600.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002825 Genomic DNA. Translation: AEH02441.1 .
RefSeqi WP_013871220.1. NC_015638.1.
YP_004580869.1. NC_015638.1.

3D structure databases

ProteinModelPortali F6GJJ6.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEH02441 ; AEH02441 ; Lacal_2600 .
GeneIDi 10780269.
KEGGi lan:Lacal_2600.

Phylogenomic databases

KOi K01971.
OMAi GEFYPFQ.

Enzyme and pathway databases

BioCyci LSP983544:GHSZ-2641-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequences of Krokinobacter sp. strain 4H-3-7-5 and Lacinutrix sp. strain 5H-3-7-4, polysaccharide-degrading members of the family Flavobacteriaceae."
    Klippel B., Lochner A., Bruce D.C., Walston Davenport K., Detter C., Goodwin L.A., Han J., Han S., Hauser L., Land M.L., Nolan M., Ovchinnikova G., Pennacchio L., Pitluck S., Tapia R., Woyke T., Wiebusch S., Basner A.
    , Abe F., Horikoshi K., Keller M., Antranikian G.
    J. Bacteriol. 193:4545-4546(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 5H-3-7-4Imported.

Entry informationi

Entry nameiF6GJJ6_LACS5
AccessioniPrimary (citable) accession number: F6GJJ6
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: October 1, 2014
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3