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F6GJJ6

- F6GJJ6_LACS5

UniProt

F6GJJ6 - F6GJJ6_LACS5

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Protein
Submitted name:

ATP dependent DNA ligase

Gene
Lacal_2600
Organism
Lacinutrix sp. (strain 5H-3-7-4)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciLSP983544:GHSZ-2641-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Lacal_2600Imported
OrganismiLacinutrix sp. (strain 5H-3-7-4)Imported
Taxonomic identifieri983544 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeLacinutrix
ProteomesiUP000008297: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF6GJJ6.

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiGEFYPFQ.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F6GJJ6-1 [UniParc]FASTAAdd to Basket

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MKHFSNLISA LEITNKTNAK IEALVNYFKT APEKDKLWLI SIFTGKRPPR    50
PVKSSLMKQW AFEITKLPEW LFLESYSTVG DLGETIALIL PNPTHTIEKP 100
LHQWMQELIA LKPKTEEEKK KYVLNAWSGL EKQERLIFNK LIGGSFRIGV 150
SKKTLVNALS KLSGIDANQL MHSIIGNWNI ETINFSDLLN GSHINYDNSK 200
PYPFCLAYAL EKDLLALGKP EDWQVEYKWD GIRGQIVKRN NEVYIWSRGE 250
ELVTSQFPEI VETITNFKDD FVIDGEILAL KDSTVLLFND LQKRLNRKNI 300
TKKLLEDIPV GFYAYDLLEY NNQDFRDKPM QERRNQLETL FSTVVINDKL 350
KLSKIINFKN WEVLKEIREN ARTINSEGLM LKQKASPYHV GRKKGDWWKW 400
KVEPLTIDAV MIYAQKGSGR RSSKYTDYTF AVKKDDGLVT VAKAYSGLTD 450
AEITEISKWV NKNALEKFGP VRTVKPELVF EIAFEGIAYS KRHKSGVALR 500
FPRIKRWRKD KPVSEIDTIE SVTALIEAQ 529
Length:529
Mass (Da):61,072
Last modified:July 27, 2011 - v1
Checksum:i03AB2A342576B2F1
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002825 Genomic DNA. Translation: AEH02441.1.
RefSeqiWP_013871220.1. NC_015638.1.
YP_004580869.1. NC_015638.1.

Genome annotation databases

EnsemblBacteriaiAEH02441; AEH02441; Lacal_2600.
GeneIDi10780269.
KEGGilan:Lacal_2600.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002825 Genomic DNA. Translation: AEH02441.1 .
RefSeqi WP_013871220.1. NC_015638.1.
YP_004580869.1. NC_015638.1.

3D structure databases

ProteinModelPortali F6GJJ6.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEH02441 ; AEH02441 ; Lacal_2600 .
GeneIDi 10780269.
KEGGi lan:Lacal_2600.

Phylogenomic databases

KOi K01971.
OMAi GEFYPFQ.

Enzyme and pathway databases

BioCyci LSP983544:GHSZ-2641-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequences of Krokinobacter sp. strain 4H-3-7-5 and Lacinutrix sp. strain 5H-3-7-4, polysaccharide-degrading members of the family Flavobacteriaceae."
    Klippel B., Lochner A., Bruce D.C., Walston Davenport K., Detter C., Goodwin L.A., Han J., Han S., Hauser L., Land M.L., Nolan M., Ovchinnikova G., Pennacchio L., Pitluck S., Tapia R., Woyke T., Wiebusch S., Basner A.
    , Abe F., Horikoshi K., Keller M., Antranikian G.
    J. Bacteriol. 193:4545-4546(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 5H-3-7-4Imported.

Entry informationi

Entry nameiF6GJJ6_LACS5
AccessioniPrimary (citable) accession number: F6GJJ6
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: September 3, 2014
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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