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F6GJJ6

- F6GJJ6_LACS5

UniProt

F6GJJ6 - F6GJJ6_LACS5

Protein
Submitted name:

ATP dependent DNA ligase

Gene

Lacal_2600

Organism
Lacinutrix sp. (strain 5H-3-7-4)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 17 (01 Oct 2014)
      Sequence version 1 (27 Jul 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciLSP983544:GHSZ-2641-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:Lacal_2600Imported
    OrganismiLacinutrix sp. (strain 5H-3-7-4)Imported
    Taxonomic identifieri983544 [NCBI]
    Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeLacinutrix
    ProteomesiUP000008297: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliF6GJJ6.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.
    OMAiGEFYPFQ.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F6GJJ6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKHFSNLISA LEITNKTNAK IEALVNYFKT APEKDKLWLI SIFTGKRPPR    50
    PVKSSLMKQW AFEITKLPEW LFLESYSTVG DLGETIALIL PNPTHTIEKP 100
    LHQWMQELIA LKPKTEEEKK KYVLNAWSGL EKQERLIFNK LIGGSFRIGV 150
    SKKTLVNALS KLSGIDANQL MHSIIGNWNI ETINFSDLLN GSHINYDNSK 200
    PYPFCLAYAL EKDLLALGKP EDWQVEYKWD GIRGQIVKRN NEVYIWSRGE 250
    ELVTSQFPEI VETITNFKDD FVIDGEILAL KDSTVLLFND LQKRLNRKNI 300
    TKKLLEDIPV GFYAYDLLEY NNQDFRDKPM QERRNQLETL FSTVVINDKL 350
    KLSKIINFKN WEVLKEIREN ARTINSEGLM LKQKASPYHV GRKKGDWWKW 400
    KVEPLTIDAV MIYAQKGSGR RSSKYTDYTF AVKKDDGLVT VAKAYSGLTD 450
    AEITEISKWV NKNALEKFGP VRTVKPELVF EIAFEGIAYS KRHKSGVALR 500
    FPRIKRWRKD KPVSEIDTIE SVTALIEAQ 529
    Length:529
    Mass (Da):61,072
    Last modified:July 27, 2011 - v1
    Checksum:i03AB2A342576B2F1
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002825 Genomic DNA. Translation: AEH02441.1.
    RefSeqiWP_013871220.1. NC_015638.1.
    YP_004580869.1. NC_015638.1.

    Genome annotation databases

    EnsemblBacteriaiAEH02441; AEH02441; Lacal_2600.
    GeneIDi10780269.
    KEGGilan:Lacal_2600.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002825 Genomic DNA. Translation: AEH02441.1 .
    RefSeqi WP_013871220.1. NC_015638.1.
    YP_004580869.1. NC_015638.1.

    3D structure databases

    ProteinModelPortali F6GJJ6.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEH02441 ; AEH02441 ; Lacal_2600 .
    GeneIDi 10780269.
    KEGGi lan:Lacal_2600.

    Phylogenomic databases

    KOi K01971.
    OMAi GEFYPFQ.

    Enzyme and pathway databases

    BioCyci LSP983544:GHSZ-2641-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequences of Krokinobacter sp. strain 4H-3-7-5 and Lacinutrix sp. strain 5H-3-7-4, polysaccharide-degrading members of the family Flavobacteriaceae."
      Klippel B., Lochner A., Bruce D.C., Walston Davenport K., Detter C., Goodwin L.A., Han J., Han S., Hauser L., Land M.L., Nolan M., Ovchinnikova G., Pennacchio L., Pitluck S., Tapia R., Woyke T., Wiebusch S., Basner A.
      , Abe F., Horikoshi K., Keller M., Antranikian G.
      J. Bacteriol. 193:4545-4546(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 5H-3-7-4Imported.

    Entry informationi

    Entry nameiF6GJJ6_LACS5
    AccessioniPrimary (citable) accession number: F6GJJ6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 27, 2011
    Last sequence update: July 27, 2011
    Last modified: October 1, 2014
    This is version 17 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3