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F6GJJ6 (F6GJJ6_LACS5) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 15. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Lacal_2600 EMBL AEH02441.1
OrganismLacinutrix sp. (strain 5H-3-7-4) [Complete proteome] [HAMAP] EMBL AEH02441.1
Taxonomic identifier983544 [NCBI]
Taxonomic lineageBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeLacinutrix

Protein attributes

Sequence length529 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
F6GJJ6 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: 03AB2A342576B2F1

FASTA52961,072
        10         20         30         40         50         60 
MKHFSNLISA LEITNKTNAK IEALVNYFKT APEKDKLWLI SIFTGKRPPR PVKSSLMKQW 

        70         80         90        100        110        120 
AFEITKLPEW LFLESYSTVG DLGETIALIL PNPTHTIEKP LHQWMQELIA LKPKTEEEKK 

       130        140        150        160        170        180 
KYVLNAWSGL EKQERLIFNK LIGGSFRIGV SKKTLVNALS KLSGIDANQL MHSIIGNWNI 

       190        200        210        220        230        240 
ETINFSDLLN GSHINYDNSK PYPFCLAYAL EKDLLALGKP EDWQVEYKWD GIRGQIVKRN 

       250        260        270        280        290        300 
NEVYIWSRGE ELVTSQFPEI VETITNFKDD FVIDGEILAL KDSTVLLFND LQKRLNRKNI 

       310        320        330        340        350        360 
TKKLLEDIPV GFYAYDLLEY NNQDFRDKPM QERRNQLETL FSTVVINDKL KLSKIINFKN 

       370        380        390        400        410        420 
WEVLKEIREN ARTINSEGLM LKQKASPYHV GRKKGDWWKW KVEPLTIDAV MIYAQKGSGR 

       430        440        450        460        470        480 
RSSKYTDYTF AVKKDDGLVT VAKAYSGLTD AEITEISKWV NKNALEKFGP VRTVKPELVF 

       490        500        510        520 
EIAFEGIAYS KRHKSGVALR FPRIKRWRKD KPVSEIDTIE SVTALIEAQ 

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References

[1]"Complete genome sequences of Krokinobacter sp. strain 4H-3-7-5 and Lacinutrix sp. strain 5H-3-7-4, polysaccharide-degrading members of the family Flavobacteriaceae."
Klippel B., Lochner A., Bruce D.C., Walston Davenport K., Detter C., Goodwin L.A., Han J., Han S., Hauser L., Land M.L., Nolan M., Ovchinnikova G., Pennacchio L., Pitluck S., Tapia R., Woyke T., Wiebusch S., Basner A. expand/collapse author list , Abe F., Horikoshi K., Keller M., Antranikian G.
J. Bacteriol. 193:4545-4546(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 5H-3-7-4 EMBL AEH02441.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002825 Genomic DNA. Translation: AEH02441.1.
RefSeqYP_004580869.1. NC_015638.1.

3D structure databases

ProteinModelPortalF6GJJ6.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEH02441; AEH02441; Lacal_2600.
GeneID10780269.
KEGGlan:Lacal_2600.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.
OMAGEFYPFQ.

Enzyme and pathway databases

BioCycLSP983544:GHSZ-2641-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF6GJJ6_LACS5
AccessionPrimary (citable) accession number: F6GJJ6
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: May 14, 2014
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)