F6GHZ7 (F6GHZ7_LACS5) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
RNA polymerase sigma factor RuleBase RU000716

Gene names

Ordered Locus Names:

Lacal_0140

Organism

Lacinutrix sp. (strain 5H-3-7-4) [Complete proteome] [HAMAP] EMBL AEG99992.1

Taxonomic identifier

983544 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Flavobacteriia › Flavobacteriales › Flavobacteriaceae › Lacinutrix

Protein attributes

Sequence length	182 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the sigma-70 factor family. ECF subfamily. RuleBase RU000716

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Ligand	DNA-binding RuleBase RU000716 SAAS SAAS007627
Molecular function	Sigma factor RuleBase RU000716 SAAS SAAS007627
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA-dependent transcription, initiation Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F6GHZ7 [UniParc]. Last modified July 27, 2011. Version 1. Checksum: 2F4DC267252C216C	FASTA	182	21,325
	10 20 30 40 50 60 MKVVQLDTIE LCKQNNRKAQ LHLYNQYCDC MYSVAKRFVN HTAEAEDIVQ ESFIKAFSKL 70 80 90 100 110 120 HQFKGDVTFG AWLKRIVVNK SIDTLKLKKQ RLVELEDVHL KVVDTSVNNK WLVDESVTLE 130 140 150 160 170 180 QIKKAIQQLP DKYRYVVMLF LVEGYDHQEI SEILNITQVA SRTQLSRGKQ KLQELLKQKH YG

References

[1]

"Complete genome sequences of Krokinobacter sp. strain 4H-3-7-5 and Lacinutrix sp. strain 5H-3-7-4, polysaccharide-degrading members of the family Flavobacteriaceae." Klippel B., Lochner A., Bruce D.C., Walston Davenport K., Detter C., Goodwin L.A., Han J., Han S., Hauser L., Land M.L., Nolan M., Ovchinnikova G., Pennacchio L., Pitluck S., Tapia R., Woyke T., Wiebusch S., Basner A. , Abe F., Horikoshi K., Keller M., Antranikian G. J. Bacteriol. 193:4545-4546(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 5H-3-7-4.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002825 Genomic DNA. Translation: AEG99992.1.
RefSeq	YP_004578421.1. NC_015638.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEG99992; AEG99992; Lacal_0140.
GeneID	10777776.
KEGG	lan:Lacal_0140.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K03088.
Enzyme and pathway databases
BioCyc	LSP983544:GHSZ-147-MONOMER.
Family and domain databases
Gene3D	1.10.10.10. 1 hit.
InterPro	IPR014284. RNA_pol_sigma-70_dom. IPR000838. RNA_pol_sigma70_ECF_CS. IPR007627. RNA_pol_sigma70_r2. IPR013249. RNA_pol_sigma70_r4_t2. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR011991. WHTH_DNA-bd_dom. [Graphical view]
Pfam	PF04542. Sigma70_r2. 1 hit. PF08281. Sigma70_r4_2. 1 hit. [Graphical view]
SUPFAM	SSF88946. Sigma_r2. 1 hit. SSF88659. Sigma_r3_r4. 1 hit.
TIGRFAMs	TIGR02937. sigma70-ECF. 1 hit.
PROSITE	PS01063. SIGMA70_ECF. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F6GHZ7_LACS5

Accession

Primary (citable) accession number: F6GHZ7

Entry history

Integrated into UniProtKB/TrEMBL:	July 27, 2011
Last sequence update:	July 27, 2011
Last modified:	May 1, 2013
This is version 13 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)