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Protein
Submitted name:

Alpha amylase catalytic region

Gene

Lacal_0668

Organism
Lacinutrix sp. (strain 5H-3-7-4)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. catalytic activity Source: InterPro
  2. cation binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciLSP983544:GHSZ-681-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha amylase catalytic regionImported
Gene namesi
Ordered Locus Names:Lacal_0668Imported
OrganismiLacinutrix sp. (strain 5H-3-7-4)Imported
Taxonomic identifieri983544 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeLacinutrix
ProteomesiUP000008297: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01176.
OMAiLRSFMNW.

Family and domain databases

Gene3Di3.20.20.80. 2 hits.
InterProiIPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.

Sequencei

Sequence statusi: Complete.

F6GE03-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKKSILLIAL SILVFGCKTD KKANQGIAEN KKKEDAKTPF VWDAANVYFL
60 70 80 90 100
LTDRFNNGDK ANDVNYGRTK ETAVLRGFEG GDLQGITQKI EDGYFTNLGI
110 120 130 140 150
NAIWMSPIVE QIHGATDEGT GNTYGFHGYW TKDWTNIDAN LGTKEDLQNL
160 170 180 190 200
VDAAHKKGIR VLLDAVINHT GPVTEQDPVW PSDWVRTDPQ CQYDNYENTV
210 220 230 240 250
TCTLVKNLPD IKTESNEAVE LPPQLVEKWK AEGRYDEEVA ELDAFFKATG
260 270 280 290 300
YPRAPRFYIM KWLSDYITDF GIDGYRVDTV KHTEAFVWQE FKDVCDNAFA
310 320 330 340 350
EFKQQNPNKV LDDNTFYLVG EVYNYGISAG KAFDFGDKKV NYFDDAFNSL
360 370 380 390 400
INFEFKWNAA QQTYEEQFKK YDSLLHTSLK GYGVLNYLTS HDDGQPFDKN
410 420 430 440 450
REKTYETATR LLLSPGAAQV YYGDESARDL TIEGTVGDAT LRSFMNWNEI
460 470 480 490 500
AYQQDLLIHW QKLGQFRRNH PSVGAGKHSM LSNTPYLFSR SYTNGNFKDE
510 520 530 540 550
VIIGIDIPKG KHTIDVSSVF KEGAQIKDFY SGEILEVTNG KITIDTESNI

LLLENIK
Length:557
Mass (Da):63,298
Last modified:July 27, 2011 - v1
Checksum:i51EFAAA4FC54733B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002825 Genomic DNA. Translation: AEH00518.1.
RefSeqiWP_013869298.1. NC_015638.1.
YP_004578946.1. NC_015638.1.

Genome annotation databases

EnsemblBacteriaiAEH00518; AEH00518; Lacal_0668.
GeneIDi10778310.
KEGGilan:Lacal_0668.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002825 Genomic DNA. Translation: AEH00518.1.
RefSeqiWP_013869298.1. NC_015638.1.
YP_004578946.1. NC_015638.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEH00518; AEH00518; Lacal_0668.
GeneIDi10778310.
KEGGilan:Lacal_0668.

Phylogenomic databases

KOiK01176.
OMAiLRSFMNW.

Enzyme and pathway databases

BioCyciLSP983544:GHSZ-681-MONOMER.

Family and domain databases

Gene3Di3.20.20.80. 2 hits.
InterProiIPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequences of Krokinobacter sp. strain 4H-3-7-5 and Lacinutrix sp. strain 5H-3-7-4, polysaccharide-degrading members of the family Flavobacteriaceae."
    Klippel B., Lochner A., Bruce D.C., Walston Davenport K., Detter C., Goodwin L.A., Han J., Han S., Hauser L., Land M.L., Nolan M., Ovchinnikova G., Pennacchio L., Pitluck S., Tapia R., Woyke T., Wiebusch S., Basner A.
    , Abe F., Horikoshi K., Keller M., Antranikian G.
    J. Bacteriol. 193:4545-4546(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 5H-3-7-4Imported.

Entry informationi

Entry nameiF6GE03_LACS5
AccessioniPrimary (citable) accession number: F6GE03
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: January 7, 2015
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.