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F6GE03 (F6GE03_LACS5) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 14. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Lacal_0668 EMBL AEH00518.1
OrganismLacinutrix sp. (strain 5H-3-7-4) [Complete proteome] [HAMAP] EMBL AEH00518.1
Taxonomic identifier983544 [NCBI]
Taxonomic lineageBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeLacinutrix

Protein attributes

Sequence length557 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functioncatalytic activity

Inferred from electronic annotation. Source: InterPro

cation binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
F6GE03 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: 51EFAAA4FC54733B

FASTA55763,298
        10         20         30         40         50         60 
MKKSILLIAL SILVFGCKTD KKANQGIAEN KKKEDAKTPF VWDAANVYFL LTDRFNNGDK 

        70         80         90        100        110        120 
ANDVNYGRTK ETAVLRGFEG GDLQGITQKI EDGYFTNLGI NAIWMSPIVE QIHGATDEGT 

       130        140        150        160        170        180 
GNTYGFHGYW TKDWTNIDAN LGTKEDLQNL VDAAHKKGIR VLLDAVINHT GPVTEQDPVW 

       190        200        210        220        230        240 
PSDWVRTDPQ CQYDNYENTV TCTLVKNLPD IKTESNEAVE LPPQLVEKWK AEGRYDEEVA 

       250        260        270        280        290        300 
ELDAFFKATG YPRAPRFYIM KWLSDYITDF GIDGYRVDTV KHTEAFVWQE FKDVCDNAFA 

       310        320        330        340        350        360 
EFKQQNPNKV LDDNTFYLVG EVYNYGISAG KAFDFGDKKV NYFDDAFNSL INFEFKWNAA 

       370        380        390        400        410        420 
QQTYEEQFKK YDSLLHTSLK GYGVLNYLTS HDDGQPFDKN REKTYETATR LLLSPGAAQV 

       430        440        450        460        470        480 
YYGDESARDL TIEGTVGDAT LRSFMNWNEI AYQQDLLIHW QKLGQFRRNH PSVGAGKHSM 

       490        500        510        520        530        540 
LSNTPYLFSR SYTNGNFKDE VIIGIDIPKG KHTIDVSSVF KEGAQIKDFY SGEILEVTNG 

       550 
KITIDTESNI LLLENIK 

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References

[1]"Complete genome sequences of Krokinobacter sp. strain 4H-3-7-5 and Lacinutrix sp. strain 5H-3-7-4, polysaccharide-degrading members of the family Flavobacteriaceae."
Klippel B., Lochner A., Bruce D.C., Walston Davenport K., Detter C., Goodwin L.A., Han J., Han S., Hauser L., Land M.L., Nolan M., Ovchinnikova G., Pennacchio L., Pitluck S., Tapia R., Woyke T., Wiebusch S., Basner A. expand/collapse author list , Abe F., Horikoshi K., Keller M., Antranikian G.
J. Bacteriol. 193:4545-4546(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 5H-3-7-4 EMBL AEH00518.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002825 Genomic DNA. Translation: AEH00518.1.
RefSeqYP_004578946.1. NC_015638.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEH00518; AEH00518; Lacal_0668.
GeneID10778310.
KEGGlan:Lacal_0668.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01176.
OMAPRAPRFY.

Enzyme and pathway databases

BioCycLSP983544:GHSZ-681-MONOMER.

Family and domain databases

Gene3D3.20.20.80. 2 hits.
InterProIPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 2 hits.
ProtoNetSearch...

Entry information

Entry nameF6GE03_LACS5
AccessionPrimary (citable) accession number: F6GE03
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: May 14, 2014
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)