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F6FVH2 (F6FVH2_ISOV2) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 11. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Isova_1647 EMBL AEG44399.1
OrganismIsoptericola variabilis (strain 225) [Complete proteome] [HAMAP]
Taxonomic identifier743718 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesMicrococcineaePromicromonosporaceaeIsoptericola

Protein attributes

Sequence length385 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
F6FVH2 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: AB4DC7C3B82183F9

FASTA38542,262
        10         20         30         40         50         60 
MSLPLQPPIL PMLAKSVPEV PEQPDGDAQW VYEPKWDGFR AIVYRDGDDV RIDSRNARPM 

        70         80         90        100        110        120 
QRYFPEVVAA VLDALPERCV VDGEIVVARP DPGPGPARLD FDALSQRIHP AESRVRLLAE 

       130        140        150        160        170        180 
QTPASLVVFD VLALGDDDLS RRPLAERLDA LDGLGLSGPH VFATPRTHDT AVAREWFEAF 

       190        200        210        220        230        240 
EGAGLDGVVA KRLDGRYEPN KRTLLKIKHA RTADVVLAGY RLHKTSTPAE PLIGSLLLGL 

       250        260        270        280        290        300 
YDGDEDGDPG QLQFVGVAAS FPAARRAALH AELAPLVVEP GTPEHEAHPW ADWQDPAVAD 

       310        320        330        340        350        360 
GTAGERRPGA QSRWSAGKDL SFTPLRVERV LEVGYDHMEG TRFRHTAQFK RWRPDRDPTS 

       370        380 
CTYAQLEEPV RYDLGSLLPG APGTA 

« Hide

References

[1]"Complete sequence of Isoptericola variabilis 225."
US DOE Joint Genome Institute
Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Zeytun A., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Siebers A., Allgaier M. expand/collapse author list , Thelen M., Hugenholtz P., Gladden J., Woyke T.
Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 225.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002810 Genomic DNA. Translation: AEG44399.1.
RefSeqYP_004542293.1. NC_015588.1.

3D structure databases

ProteinModelPortalF6FVH2.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEG44399; AEG44399; Isova_1647.
GeneID10733262.
KEGGiva:Isova_1647.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycIVAR743718:GI39-1674-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 2 hits.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF6FVH2_ISOV2
AccessionPrimary (citable) accession number: F6FVH2
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: October 16, 2013
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)