F6FVH2 (F6FVH2_ISOV2) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL AEG44399.1

Gene names

Ordered Locus Names:

Isova_1647

Organism

Isoptericola variabilis (strain 225) [Complete proteome] [HAMAP]

Taxonomic identifier

743718 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Promicromonosporaceae › Isoptericola › Isoptericola variabilis

Protein attributes

Sequence length	385 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AEG44399.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F6FVH2 [UniParc]. Last modified July 27, 2011. Version 1. Checksum: AB4DC7C3B82183F9	FASTA	385	42,262
	10 20 30 40 50 60 MSLPLQPPIL PMLAKSVPEV PEQPDGDAQW VYEPKWDGFR AIVYRDGDDV RIDSRNARPM 70 80 90 100 110 120 QRYFPEVVAA VLDALPERCV VDGEIVVARP DPGPGPARLD FDALSQRIHP AESRVRLLAE 130 140 150 160 170 180 QTPASLVVFD VLALGDDDLS RRPLAERLDA LDGLGLSGPH VFATPRTHDT AVAREWFEAF 190 200 210 220 230 240 EGAGLDGVVA KRLDGRYEPN KRTLLKIKHA RTADVVLAGY RLHKTSTPAE PLIGSLLLGL 250 260 270 280 290 300 YDGDEDGDPG QLQFVGVAAS FPAARRAALH AELAPLVVEP GTPEHEAHPW ADWQDPAVAD 310 320 330 340 350 360 GTAGERRPGA QSRWSAGKDL SFTPLRVERV LEVGYDHMEG TRFRHTAQFK RWRPDRDPTS 370 380 CTYAQLEEPV RYDLGSLLPG APGTA

References

[1]

"Complete sequence of Isoptericola variabilis 225." US DOE Joint Genome Institute Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Zeytun A., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Siebers A., Allgaier M. , Thelen M., Hugenholtz P., Gladden J., Woyke T. Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 225.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002810 Genomic DNA. Translation: AEG44399.1.
RefSeq	YP_004542293.1. NC_015588.1.
3D structure databases
ProteinModelPortal	F6FVH2.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEG44399; AEG44399; Isova_1647.
GeneID	10733262.
KEGG	iva:Isova_1647.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
Enzyme and pathway databases
BioCyc	IVAR743718:GI39-1674-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F6FVH2_ISOV2

Accession

Primary (citable) accession number: F6FVH2

Entry history

Integrated into UniProtKB/TrEMBL:	July 27, 2011
Last sequence update:	July 27, 2011
Last modified:	April 3, 2013
This is version 10 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)